Methanoculleus chikugoensis: MchiMG62_20210
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Entry
MchiMG62_20210 CDS
T07488
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mchk
Methanoculleus chikugoensis
Pathway
mchk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mchk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MchiMG62_20210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mchk03019
]
MchiMG62_20210
03009 Ribosome biogenesis [BR:
mchk03009
]
MchiMG62_20210
Enzymes [BR:
mchk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MchiMG62_20210
Messenger RNA biogenesis [BR:
mchk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MchiMG62_20210
Ribosome biogenesis [BR:
mchk03009
]
Prokaryotic type
rRNA helicases
MchiMG62_20210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Hyccin
Motif
Other DBs
NCBI-ProteinID:
BBL68840
LinkDB
All DBs
Position
2044706..2046292
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AA seq
528 aa
AA seq
DB search
MEQNITFQELNISPKTLRAIEDMGFEEPTPIQVSTIPAILDGRDVTGQAQTGTGKTAAFG
VPAIERVDPDSRETQVLVLSPTRELAIQTAEEFARLAKHHRGINILPIYGGQPIDRQFRA
LQRGAQVVVGTPGRVLDHLDRGTLSFGGVKIVVLDEADQMLDMGFREDIEKILDETPRDR
QTVLFSATLPRPILEISKKFQKNPEFISVARKEVTVPQIEQLYLEVRSRDRLEVLTRLLD
MYDPDLTLIFSNTKRGVDDLTTHLQARGYFAEGLHGDMKQALRDRVMAKFRGGNIDILVA
TDVAARGIDVEDVDLVVNYDVPQDIEYYIHRIGRTARAGRTGRAVTFVGPKEYFKLRTIQ
NYTKIKIARIPLPTQGDVEESRTRKLIDRVHQTIDEGDLDKYANLVERIIAEDYTSLEVA
AALLKLELGGGAGQGQPQDIGPARGLALLRIPVGREDQIRPKDIVGALAGETGIPGSALG
AINIYDTYSTVDVPLDAAEQIIEGMKGKTIARARLTRPIEIIETPGGR
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaatattaccttccaggaactcaatatctcgccaaagacactccgcgcaata
gaagatatgggttttgaggagcccacgccaatccaggtcagcaccatcccggcgatactc
gacgggcgcgacgttaccggccaggcgcagaccggaaccgggaagacagccgcgttcggc
gtcccggcaatcgagcgcgtcgaccccgacagccgggagacgcaggtgctcgtcctctcc
cccacccgggaactcgccatccagaccgccgaagagtttgcccgcctcgcgaaacaccac
cggggcatcaacatcctcccgatctacggcggccagccgattgaccggcagttccgggcg
ctgcaacgcggcgcccaggtcgtcgtcgggacacccggccgggtgctcgaccacctcgac
cgcgggacgctctcgtttggcggggtgaagatcgtcgtcctcgacgaggccgaccagatg
ctggacatgggttttcgggaagacatcgagaagatcctcgacgagaccccgcgtgaccgc
cagacggtcctcttctcggccaccctcccgagacccatcctggagatctcgaagaagttt
cagaagaaccccgagttcatctcggtcgcgcgcaaggaagtgaccgtcccgcagatcgag
cagctctacctcgaggtgcggagccgcgacaggctcgaggtcctcacccggctgctcgac
atgtacgaccccgacctgacattgatcttctcgaacaccaaaaggggcgtcgacgacctg
accacgcacctccaggcccgcggctacttcgccgaggggcttcacggggacatgaagcag
gccctgcgcgaccgggtgatggcgaagttccgtggcgggaacatcgacatcctggtggca
acagacgtcgccgcacggggcatcgacgtcgaggacgtcgacctggtcgtcaactatgac
gtcccgcaggatatcgagtactacatccaccgcatcgggaggacggcgcgggccgggcgc
accggccgggccgtcacgttcgtgggcccgaaggagtacttcaaactccggacgatccag
aactacacgaagatcaagattgcccggatcccgctcccgacccagggggacgtcgaggag
agccggacgcgcaaactcatcgaccgggtgcaccagaccatcgacgagggcgacctcgac
aaatacgcgaacctcgtcgagcggatcatcgccgaggactacacctcgctcgaggtagcc
gccgccctcctgaaactggaactcggcggcggagccggccagggccagccgcaggatatc
ggaccggcccgggggctggctcttctcaggatcccggtcggcagggaagaccagatcagg
ccgaaggatatcgtcggagcgctcgcgggcgagaccgggattcccggcagcgccctcggc
gcgatcaacatctacgacacctactccaccgtcgacgtgccccttgacgccgccgaacag
atcatcgaggggatgaaaggaaagaccatcgcacgggccaggctgacccggccgatcgag
atcatcgagacgcccggcggacggtaa
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