Melitaea cinxia (Glanville fritillary): 123668679
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Entry
123668679 CDS
T09237
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Pathway
mcix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123668679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcix03019
]
123668679
Messenger RNA biogenesis [BR:
mcix03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123668679
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123668679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
123668679
NCBI-ProteinID:
XP_045458342
LinkDB
All DBs
Position
Z:complement(4149523..4169910)
Genome browser
AA seq
2151 aa
AA seq
DB search
MTTSDDMAAAMMDNSLAEIIRDIGYTFTASVEDCKNNMINFGAREPTAIDIARIISMMVR
YHATLSDGPQIQTPGNYWMNHEAKKEAHGHPETWNAEIFVQTLKELASNLNWKEVILQLD
HPEFIVPDRQGLSLLFTILRLGLQSAGYPANVFPVEYLCRRWTNLEGQMSLITNILKHSD
IFSFADYPFHPVSIDLLKSPPETDNKEISTWRCLYLVELLLYASERGYYMQVHELFKFPL
QHCPDVLLLALLQINPPVTVFRQELLTTLIPIFLGNHPNSGIMLQHAWHSQNPNIKPIIM
HAMADWYIRGESDQSKLSRILDVAQDLKALSLLLNVQSFPFVIDLACLASRREYLKLDKW
LTDKIRDHGETFVSAMVKFLQRRCPQVLGKVPEEQLPKAAQLPPETIGTMLTCLQLCIPN
VQQELQEAICNVIANCQTLILSKARPGIAGIARPHTRVLETPFNPAGLGGQLFATPHVDT
IANLTPNVANMTLGTPANTAFAMPGTLGPLVTTPASPSRLMGAGPNSPFAMIQMQHNPNM
ANMTALARMPPAPTMDKPRLPDPIHFPEMMHNVSKEIEDEANSYFQRIYNHPPHPTLSID
EVLEMLKKFQDSPNKREREVFSCMLRNLFEEYKFFPQYPDKELHITAQLFGGIIEKGLVP
SYVSLGLALRFVLDALRKPEGSKMYYFGIAALDRFKSRLKDYHKYCEHVRAIPHFSEFPP
HLVEYIEYGLQSQEPPTKPQGAVLPASLAAMLNQNAVVTVSAPYRAVVCVHNPISVISKV
TNCTAGGIGSRPSIANATNIDTLLTATDRDEKINAPPEAIQDKTAFIFNNLSQLNLQTKC
EELKEIITDEYYQWLSQYLVMKRASIELNFHALYSNFLDVLKIREINKMVTKETYRNIRV
LLRSDKGIANFSDRSLLKNLGHWLGMLTLARNQPILYVDLDLKALLLEAYHKGQQELLYV
VPFVAKVLESCAKSVVFRPPNPWTMALMNVLAELHQEPDLKLNLKFEIEVLCKNLSLDIT
DLKPSLYLKDPEKLRTIEFQLSQPKPKEATNVIPVNQAVVQAPQIQMMPPQQPMIPVEDM
TAAVPTPTSGMLPNDPNMMGVLGLPEPRFNYLDVNVSSTSAFGQKICFNPHIILFQNYPH
LKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFAFDPDEVRMRTCAHHMMRNL
TAGMAMITCREQIISTISTNLKAAFITALIPTTPQQLNALQKDIIESAAAVLATENMELA
CAFIQKTAVEKALPELDKRLMNDYEMRKIARQEGRRYYDPLVLTYQTERIPERVRLRVGG
PTDLQISVYEEFACNIPGFVPVRDAGMFIPKPSAQEQIPQVAFNQVMNPTQVYGTDEMGT
LITAAELFLSNALSVPLFAVQATNTHTLLECLIIARRNRDIVSGYTLLQRAVEGLLDGHI
VQPGSNPEHAEMMTRYRDIHLRVLKLLEDARVYGHAWTTKQITYCVTECRDELRYNLEAI
DCLIRNHLINLPQYDLALAHLMDNGNNYVAVAFAMQLVQLYLVDDRNTMYATESDLYHTT
ETLVRMMSHSRQAPPEGLATLIETIRINQDPSTYLGERSPLGPTAHIHNGILQVRARDYE
DPPGLQEKTENLLREWRNVLLSPLTEIEIGQNFNIYVHRMNMNGILKSDDMITRFFRIAT
QMCIENVYQLLTEDRMNPPPVPPKRDKYYAICDSFIKLVSLLIKNTADGGNPTPKLNLLN
KILGIIAGCLLQDHEEHGANFQQLPYHRLLLILFLDMNMAEPVLESMNYQVLTAFCHTLR
IIRPSVAPGFCYAWLEIVAHRAFVNRVLAVTPQQKGWGMYSTLLIDLFKFLDPFLRNTEL
ATPVMMLYKGTLKVLLVLLHDFPEFLCDYHYGFCDEIPPNCIQMRNLILSAFPRNMRLPD
PFTPNLKVDLLAEITLPPRAVINYATIIPSTQFKKDLDAYIKARAPVTFLSELRSNMQVV
NEPGRRYNSQLINAVVLYVGTQAIAHIRSKGQTPNMTTIAHSAHMDIFQNFTVDFDYEGR
YLFLNAIANQLRYPNSHTHYFSCCLLYLFAEANSEAVQEQITRMLLERLIVNRPHPWGLL
ITFIELIKNPIYKFWSHEFVHCAPEIEKLFASVARSCIADKAGGGERELTE
NT seq
6456 nt
NT seq
+upstream
nt +downstream
nt
atgactacatctgacgatatggcagcagctatgatggacaactccctagcggaaatcatt
cgcgacatcggttataccttcacggcctcagtcgaagactgcaaaaacaacatgattaat
tttggtgcgagggagcctacagcaatagacatagcaagaataatttctatgatggtgaga
taccatgcaacattatcggatggaccacaaatacaaacacctggaaattactggatgaat
cacgaggccaagaaagaagcacatggccatcctgagacatggaatgctgaaatctttgtg
caaacattaaaagaattagcctcgaatttgaattggaaagaagtcattctgcaacttgac
catccagaatttatagtgcctgatagacaaggtttaagcctactctttacgattttgagg
ttaggtcttcaaagtgcaggctatcctgctaatgtatttcctgtagaatatctgtgtcgt
cgctggacaaatttagaaggtcaaatgagtttgattaccaacatactcaagcattcagac
atatttagttttgccgattatccattccatcctgtatccattgaccttttaaaatctcct
ccggaaactgataataaagaaatatctacttggcgatgtctttacttggtagagctttta
ttatacgcatcagagcgtggatattacatgcaagttcacgaattatttaaatttccgcta
caacattgtcctgatgttttactgcttgcattattacaaataaatccaccagtaactgta
tttagacaagaattattaacaacattaatcccgatattcctcggcaatcatcctaattca
ggaattatgctgcaacatgcatggcattctcagaatcctaatataaaaccaataattatg
catgctatggcagattggtatatacgtggcgaaagtgatcaatcgaagttatcgagaatt
ttggacgttgctcaggaccttaaagcgttgtcattgctattaaatgtccaatcgttccca
tttgtcattgatttagcatgccttgcttcacggagagagtatcttaaattggataaatgg
ttaacggataaaataagggatcacggtgagacttttgtttccgctatggtgaaatttctt
cagcgacgatgtccacaagtgcttggtaaagtaccagaggaacaactacccaaagctgca
cagttgccgccagaaactattggtacaatgctaacatgcttgcaactatgtatacccaat
gtgcagcaagaactacaagaagcaatatgcaacgttatagctaattgtcagacattgatt
ttgagcaaagcaagaccgggaatagcaggtattgctcgtccgcatactagagtactagaa
acgccctttaacccagctggtctgggtgggcaactgtttgcgacccctcacgtggatact
attgcgaacttgacaccaaatgtggccaatatgaccttaggtacacctgctaatacagcc
tttgctatgcctggcactctggggccgctagtgaccactccagcgtcaccgtcgagacta
atgggtgcgggaccaaacagtcctttcgctatgattcaaatgcaacataaccctaacatg
gcaaacatgacagcccttgctagaatgcctcccgcaccgaccatggataaaccacgatta
cctgatcctatacattttcccgaaatgatgcataatgtttcaaaagaaatagaagacgaa
gcaaatagctattttcaaaggatctacaaccatcctcctcatccgactctgtctatagat
gaggtgttagaaatgctaaagaagttccaagattcaccaaataagagggaacgagaggtg
ttttcttgcatgctccgaaatcttttcgaagaatacaagttcttcccacaataccccgat
aaagagctccatatcacagcacaattgtttggtggtataattgaaaaaggtctagttcct
agctacgtttcgctaggactggctttaagattcgtcttagacgctttacgaaaaccagag
ggctctaaaatgtactactttggtatagcggctctagatagatttaaatctcgtttaaaa
gactatcacaagtactgtgaacacgttagggctatacctcattttagtgaatttcctcca
catttagttgaatacatcgaatatggacttcagagtcaagaaccacctactaagccacag
ggagcagttttaccagcgagtctcgcagccatgttgaaccagaacgccgttgtaaccgtt
tctgcgccatacagggcagttgtctgtgtacacaatcccatctcagttatatcgaaggtt
accaattgcacggctggtggcattggtagtagaccctctattgcaaatgccactaacata
gatacgttacttactgcgactgatagagatgaaaaaataaacgctccgccagaagcaata
caagataaaactgctttcatatttaataatctcagccaactgaacctacagaccaaatgt
gaagagttaaaggaaataatcactgatgaatattatcaatggctctctcagtatcttgta
atgaagagagcttcgatcgaactaaattttcacgctctgtattctaatttcctcgacgtt
ttaaaaattcgtgaaataaacaagatggtaactaaagaaacttatcgaaatataagagtg
cttttgcgatctgacaaaggcatagcgaacttctctgatcgatcgttgttgaaaaacctc
ggtcattggttaggtatgttgacattagctcgcaaccagccaattctttatgtagatcta
gacctcaaagcactcctacttgaagcttatcacaagggtcagcaggagctactttacgtc
gtgccgtttgttgcgaaggtcttggaatcctgtgccaagagcgtcgtatttagaccgccg
aatccgtggactatggctctgatgaacgtattggccgaattacatcaagaaccagatttg
aaactgaatttgaagtttgaaatagaagtgctttgtaaaaacttaagtttagatataact
gatttaaaaccatctctatatttgaaagatccggaaaagttaaggactattgaattccaa
ctatcacagccaaaaccgaaggaggcgactaatgtaataccggtcaaccaggccgtcgtt
caggcaccacaaatacaaatgatgccccctcaacagccgatgattccagttgaagacatg
actgctgccgttccaacgcccacaagtggcatgctgcccaacgatccaaacatgatgggc
gttcttggattacctgagcctagatttaactatctagatgtcaacgtatcttccacctct
gcgttcggacagaaaatatgttttaatccacatattattctcttccaaaattatccacat
ctgaagcagtttgtgaagcctgctatcgaaagatcaattcaagagtggattcacccagtt
gttgatagatctatcaagtatgccttgacgacatgtgagcaaattataagaaaagatttt
gcctttgaccctgatgaagtgcgaatgcgaacttgtgcgcaccatatgatgcggaacctc
actgctggaatggctatgataacgtgccgcgagcaaataatcagtaccatcagtactaac
ttgaaagctgcattcatcactgctttgataccaacaactccacaacagttgaatgcttta
cagaaggacattatagaaagtgcagcagcagttctagcgactgaaaatatggaactcgct
tgtgcttttattcaaaagacggcagtcgaaaaagcgttacctgaactagataaaaggcta
atgaacgattacgaaatgaggaagattgccaggcaagaaggtcgacgatactatgaccca
ttggttcttacttatcaaactgaacgtataccagaaagggttcgtctgcgagttggtggc
cctacagatttacaaatatcggtatatgaagagtttgcgtgcaacatcccaggttttgtg
cccgttcgtgatgcgggaatgttcattcctaaaccatctgcgcaggagcaaataccgcaa
gtggcattcaatcaagtaatgaatcctacacaggtgtacggtacagatgaaatgggcaca
cttataacagcggcggaattgttcctgtcgaacgctttgagtgtacccttgtttgcagtt
caagctacaaacacgcatacattgcttgagtgccttataattgcgagacggaaccgcgat
atcgtttccggatacacattgttgcagagagctgtcgaaggtcttctggacggtcacatc
gtccagcctggttcgaaccctgaacatgccgagatgatgactcgctaccgtgatattcac
cttcgagtcctgaagctcctggaggacgccagggtatatggccacgcgtggacgaccaaa
caaattacgtactgcgtcacggaatgcagagatgaactcagatataatcttgaagcaatc
gactgtttgattagaaatcatcttattaatctaccgcaatacgacctcgctttggcgcat
ctcatggacaatggtaacaactatgtcgcggtggcattcgcgatgcaattggttcagctt
tacctagttgatgacaggaacactatgtatgcgactgaatctgatttgtaccatacaaca
gagacactcgtcagaatgatgtctcactccagacaggctcctccggaaggccttgctact
cttattgaaactatcagaataaaccaagatcctagcacgtatctcggtgaaagatcacca
ctaggaccaactgctcatattcacaatggaatattacaagtcagagcccgagactacgaa
gacccgcccggcctgcaagagaaaaccgaaaatcttcttcgcgaatggagaaacgtacta
ctgagcccattaactgagatagaaataggccagaacttcaatatttatgtccatcgcatg
aatatgaacggaatactgaagtctgatgatatgataacacgtttcttcagaattgcgaca
cagatgtgtattgaaaatgtttaccagttgttgacagaggacagaatgaatcctccccca
gtgcctccaaagagggataagtactacgcaatatgtgattctttcatcaagctcgtgtcg
cttttgataaagaacacggcagatggtggtaatcctacaccgaaactcaatttgctcaat
aagatcctcggtataattgctggttgccttctccaagaccacgaagagcatggtgctaat
ttccagcagctaccgtatcatcgtctactcctgatacttttccttgacatgaacatggca
gagcccgtcttagaatctatgaactatcaggttctcacagcgttctgccacaccctccgc
ataatccgacctagcgtggctcctggtttctgctacgcctggcttgaaatcgtggctcac
agggccttcgtcaacagagtactagccgtgacgccgcaacagaagggctgggggatgtat
tcgacgctgcttatcgaccttttcaagttcctcgatccattcctacgtaacacggaattg
gcgacgcccgttatgatgctttacaaggggacgctgaaagtgttactcgtcttacttcac
gactttcccgagttcctatgcgactaccactatggattttgtgatgagataccgccaaat
tgtatccaaatgagaaatctcatcctatcagcctttccgaggaacatgaggctgcctgat
cctttcacgccgaatttaaaagttgacctattagccgagatcaccctgccgcctcgggct
gtgatcaattacgcgacgataataccctctactcagttcaagaaggatttggacgcatat
atcaaggcgagggcgcctgtcacgttcctgtctgagctgcgtagtaatatgcaggtggtg
aatgagccgggccgcaggtacaacagccagctaataaatgccgttgtcctgtatgttggt
acgcaagcgatcgcccacatccggtccaagggtcagacaccgaacatgaccaccatcgcc
cactccgcgcatatggacatcttccaaaactttaccgttgactttgattacgaaggaagg
tacctgttcctgaatgcgatcgcgaatcaacttcgctacccgaacagtcacacccactac
ttcagctgttgtctgctctacttgttcgcggaggcgaactctgaagccgtacaagaacag
ataactagaatgttactcgagaggcttatcgtaaaccgtccgcatccgtggggtctactg
ataaccttcatcgagttgatcaagaaccctatctacaagttctggagccacgagtttgtt
cattgcgctccggagatcgagaagctgttcgcttccgtggcgcgttcctgtatcgccgat
aaggcgggagggggggaacgggaactgaccgagtag
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integrated database retrieval system
