Microbulbifer sp. CNSA002: ACG1BZ_02605
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Entry
ACG1BZ_02605 CDS
T11270
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mcns Microbulbifer sp. CNSA002
Pathway
mcns03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcns00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACG1BZ_02605 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcns03021
]
ACG1BZ_02605 (rpoB)
03400 DNA repair and recombination proteins [BR:
mcns03400
]
ACG1BZ_02605 (rpoB)
Enzymes [BR:
mcns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACG1BZ_02605 (rpoB)
Transcription machinery [BR:
mcns03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACG1BZ_02605 (rpoB)
DNA repair and recombination proteins [BR:
mcns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACG1BZ_02605 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
XNW48153
LinkDB
All DBs
Position
592764..596837
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPKVMDVPFLLAIQLDSYRNFTQADKRPDDRMDVGLQAAFKSV
FPIVSYSGNAALEYVSYTLGKPAFDVKECTLRGVTYACPLRVRVRLIIYDKESANKSIKD
IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYAARV
IPYRGSWLDFEFDPKDLVFVRIDRRRKLPATILLRALGYTSQEMLEMFFETSTFELLEDR
VSLELIPSRLRGDVASFDIKDGQGKVIVEEGRRITPRHIRQLEKAGVEKLEAPLEYLFGR
VLANDIIDESTGEIAIDCNTEITDEVIAKLRVLNVKSFQTLYTNDLDRGPFISDTLRAEP
SRTVLEALVEIYRMMRPGEPPTKESAEALFENLFFTDERYDLSAVGRMKFNRRLGREDET
GPGTLSKEDIVEVLKTLIDIRNGQGMVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARANHYGFLESAYRKVV
DGKVTDEIAYLSAINEANFIIAQASAEVDDNGNFVDDLISVRHQGEFTLKAPGEIQYMDV
SAKQVVSVAAAMIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERTVARDSGVC
VVAKRGGIIERVDSSRVVVRVADAEVEAGDAGVDIYNLTKYIRSNQNTCINQRPIVNTGD
RVVRGDILADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTIHIQE
LTCIARDTKLGSEEITADIPNVGESALNKLDESGIVYIGAEVGAGDILVGKVTPKGEAQL
TPEEKLLRAIFGEKASDVKDTSLRAPSGTRGTVIDVQVFTRDGLQKDQRSLDIEKSQLDE
VRKDLNEEYRIVEGATFERLQQALLGQKAAGGKSVKKGDEMTAEVLAALPREDWFKLRME
DDSLNDQLEKAEAQLKERRKLLDEAFEDKKKKLESGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVISVIKPVEDMPYDQNGEPVDIVLNPLGVPSRMNVGQVLEMHLGMAAKG
LGVKVDKMIKEQQEIAKVRGFLEEVYNSTGGRKEELDEFSDEEVMTMAQNLRRGVPMATP
VFDGADESEIKQLLRLADIPDSGQITLHDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTKMY
KNIVDSDHRMEPGMPESFNVLVKEIRSLGMNFELEHE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggattttggcaaactgcctaag
gtcatggatgtgccctttctgcttgcgatacagctcgattcttatcgcaactttacacag
gccgacaagcgccccgacgaccgtatggacgttggcctgcaagcggcgtttaaatctgta
tttccgattgtcagctattccggcaatgccgccctggagtacgtaagttatacgctgggt
aagcccgcttttgacgttaaggaatgtaccctgcgcggcgtaacctatgcatgtccgctg
cgcgtgcgtgtgcgtctgattatttacgataaagaatctgcgaataagtccattaaggac
attaaagagcaggaagtttacatgggcgagattccgctcatgaccgacaacggtaccttc
gtaatcaatggtaccgagcgcgttatcgtatcccagctgcaccgttccccgggtgtattc
ttcgatcacgacaaaggcaagactcactcttccggtaagctgttgtacgccgcgcgtgtc
atcccctaccgtggctcatggctggacttcgagttcgatccgaaagacctggtgtttgtg
cgtatcgatcgtcgccgtaaattgccagcgactattctgctgcgcgccctgggttacacc
tcccaggaaatgctggaaatgttcttcgagaccagcacctttgagctgttggaagaccgt
gtcagcctggagctgattccgtctcgcctgcgcggtgatgttgcttcttttgacatcaaa
gacggccagggcaaggtgattgtcgaagagggtcgccgtattaccccgcgtcatatccgt
cagttggaaaaggccggcgtagaaaagctggaagcaccgctcgagtacctgtttggccgt
gtactggcgaacgacatcatcgatgagtccaccggtgagatcgcgatcgactgtaacacc
gagattactgatgaagtaatcgccaagctgcgtgtactgaacgttaagagtttccaaacc
ctgtacaccaacgacctggatcgcggtccgtttatctccgacaccctacgtgcagagccg
tctcgcactgtgttggaagcgctggtagagatttaccgtatgatgcgcccgggcgaaccg
cccaccaaggagtccgcagaagcgctgttcgagaacttgttctttaccgacgagcgttac
gacctgtccgctgttggccgcatgaagttcaaccgacgtctgggtcgcgaagacgaaact
ggccccggcactctgagcaaagaagatatcgtcgaagttctgaagactctgatcgatatc
cgcaacggtcagggcatggtcgacgatatcgatcacctgggtaaccgtcgcgtgcgttcc
gtaggcgaaatggctgaaaaccagttccgcgttggcctggtacgtgtagagcgcgctgtt
aaagagcgcctgtccatggcggagtccgaaggcctgatgcctcaggacctgatcaatgcc
aagccggttgccgctgccgtgaaggaattcttcggttcctcgcagctgtcccagtttatg
gaccagaacaacccgctgtcggaagtgactcacaagcgtcgtgtttccgccctcggcccg
ggtggtttgacccgtgagcgcgctggctttgaggtgcgcgacgtgcacccgactcactac
ggccgcgtatgtccgattgagacgccggaaggaccgaacatcggtctgattaactccctg
gccacttacgcccgcgccaaccattacggtttcctcgagagcgcctaccgcaaagtggtc
gatggcaaggtaactgatgaaattgcgtacctgtccgcgatcaatgaagccaacttcatt
attgcccaggcgtctgcggaagtagatgacaacggcaactttgttgatgacctgatcagc
gtgcgtcaccagggcgaatttaccctgaaagcaccgggcgaaatccagtatatggatgtt
tccgccaagcaggtggtttccgtagctgcggcgatgattccattcctcgagcacgatgac
gccaaccgtgcattgatgggatcgaacatgcaacgtcaggcggtaccgaccctgcgcgct
gaaaagccgctggtgggcaccggtatggagcgcactgtagcgcgcgactccggcgtgtgt
gtggttgctaagcgcggcggcattattgagcgcgttgattccagccgtgtggttgttcgc
gtggccgacgctgaggtggaagccggtgatgcaggtgtggatatctacaacctgaccaaa
tacatccgctccaaccagaatacctgtatcaaccagcgcccgatcgttaataccggcgat
cgtgtagtccgtggcgatattctcgccgatggtccctctgtagacctgggtgagctggct
ctgggccagaatatgcgcatcgcatttatgccctggaatggttacaactttgaggactcc
atcctcatcagtgagcgcgttgtacaggaagaccgcttcaccaccatccacattcaggag
ctgacctgtattgcccgcgataccaagctgggcagtgaggaaattactgcggatatcccc
aatgttggcgaatctgccctgaataagctggacgagtccggcatcgtatacatcggcgca
gaagtaggcgctggcgatatcctggtcggtaaggtcactccgaagggcgaagcccagctg
actccggaagaaaaactgctgcgcgcaatcttcggggagaaagcttccgacgttaaggac
acctccctgcgcgcgcccagtggcacccgcggtacggtgatcgacgttcaggtatttacc
cgcgacggcctgcagaaagaccagcgctccctcgatatcgagaagtcacagctggacgag
gttcgcaaggatctgaacgaagaataccgcatcgttgaaggtgcgaccttcgagcgtctg
caacaggctctgctgggccaaaaggccgccggtggtaagagtgttaagaagggcgatgag
atgaccgctgaagtcctcgccgctctgccgcgcgaagactggttcaagctgcgtatggaa
gacgacagcctgaacgatcagctggaaaaagcggaagctcagctgaaagagcgtcgcaag
ctgctcgacgaagccttcgaagacaagaagaagaaactggagtccggcgatgacctggct
ccgggcgtgctgaaaatcgtcaaggtttacctggcgatcaaacgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgttatctccgtaatcaagcccgttgag
gacatgccttatgaccaaaacggtgagccggtagatatcgtcctgaacccgctgggcgtt
ccctcgcggatgaacgttggtcaggttctggaaatgcacttgggcatggccgctaaaggc
ctcggcgttaaagtcgacaagatgatcaaggagcagcaggaaatcgccaaggtgcgcgga
ttcctggaagaggtctacaactccactggcggacgcaaggaagaactcgacgagttctcc
gatgaggaagtcatgaccatggcgcaaaacctgcgtcgcggtgtacctatggcgaccccg
gtatttgacggtgccgatgaaagtgagatcaagcagctgctgcgtcttgccgatatcccg
gattccggtcagatcaccctgcacgacggccgcaccggcgatgctttcgagcgtccggta
actgtgggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgcg
cgttctaccggttcctacagcctggttacccagcagccgctgggtggtaaagcccagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcttacggcgctgcatac
accctgcaggaaatgctcacggttaaatccgatgacgtggaaggccgtaccaagatgtac
aagaacatcgtggactccgaccaccgcatggagccgggcatgccggaatccttcaacgta
ctggttaaggaaatccgctctctcggtatgaacttcgagcttgagcacgagtaa
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