Mastomys coucha (southern multimammate mouse): 116069954
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Entry
116069954 CDS
T07224
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116069954 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116069954 (Cnot1)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116069954 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116069954 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
116069954
NCBI-ProteinID:
XP_031196846
LinkDB
All DBs
Position
Unknown
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMSKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLTQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgattcaggagtgtgcctca
ctaattacaaagccaaattttatctcgacattgtcatatgccattgataacccattgcac
taccagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagtaaagtacaagaggtaatttttggtcttgcccttttgaattcttctagcccagat
ctcaggggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctactctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttcttaagacactacgcagagattttccccaagaacgttgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggattttg
cctgattctggaggggtagctaaaaccatgatggagagctccctggcagacttcatgcag
gaagtgggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgcgaggtcacagctgcccaggttgccagggttttgggaatgatggctcggact
cattcaggattgacggacggcattccattacagagcatctctgctcctggcagtgggatc
tggagcgatgggaaagataaaagcgagggggcacaggcacacacgtggaatgtagaggtt
ttgattgatgttcttaaagagctgaacccgagtttgaatttcaaggaagtaacttatgaa
ttggaccatcctggatttcaaattcgtgacagcaaaggacttcacaatgtggtttatggc
attcagaggggtctgggcatggaagtgtttccagtagattttatatataggccttggaaa
catgcagaaggccagctctcctttatccagcattccctgataaacccagaggtcttttgc
tttgctgactacccctgtcacactgttgccactgatattttgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaaaagcttggatttgattgaatctctgctgaggctt
gcagaagttggacagtatgagcaagtgaaacagctcttcagcttccctattaaacactgt
ccagacatgctggtattggccttacttcaaatcaacacttcctggcacaccctacgccat
gagctcatctctactttgatgccaattttccttggaaaccatcctaactctgccattatt
ttgcactatgcatggcatgggcagggacagtctccatcaattcgccaacttataatgcat
gcaatggcagagtggtacatgagaggggagcagtatgatcaggccaaattgtctcgaata
cttgacgtggcccaggacttgaaggccctgtctatgctgctgaatggcactccatttgcc
tttgttattgaccttgctgcacttgcttcccggcgtgaatacctcaaacttgacaagtgg
ctaacagataagataagagagcatggggagccttttatacaagcatgtatgactttttta
aagagaaggtgcccttccattttgggtggacttgccccagagaaagatcagcccaaaagt
gctcaacttcctgctgaaactctagcaacaatgttggcttgcctacaagcttgtgcaggg
agtgtttctcaagagttatcagagactatccttaccatggtagccaattgcagtaatgta
atgaataaggccagacagccaccacctggagttatgtcaaaaggtcgccctcctagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttgctgggatggcatctctt
agtataggtggttcagctgcccctcacacccagagcatgcaggggtttcctccaaatttg
ggttctgcgttcagtacccctcagtcaccagcaaaagcatttccaccactttcaacccca
aatcaaacaacggctttcagtggtattggaggactttcctcacagcttccagtaggtggt
cttggcacaggaagcctgactggcataggaactggggcccttggacttcctgcagtgaac
aatgatccttttgtacagaggaaactgggcacctctggactcacccagcccacattccag
cagagtaagatgaagccttccgacttgtctcaggtgtggccagaggcaaatcagcatttc
agtaaagaaattgatgatgaagcaaacagctatttccagcgaatatataatcatccacca
catccaaccatgtctgttgatgaggtattagaaatgctacagagatttaaagactcgaca
ataaaaagggagcgagaagtatttaactgtatgctgaggaatttatttgaagaataccgg
tttttcccacagtaccctgataaagaattacacataacagcctgcttgtttggtggcatc
attgaaaaaggattggtcacttacatggcattgggtctggccctgcgatatgttcttgaa
gccttacggaagccttttggatccaaaatgtattattttggtattgctgcattagataga
tttaaaaatagattgaaggactatcctcagtattgtcagcacctggcttctatcagtcac
tttatgcagtttccacatcatttgcaggagtacatcgagtacggacaacagtctcgagat
cctcctgtgaaaatgcagggctctatcaccacccctggaagtattgcactggctcaggca
caggcgcaggcccaggttccagcaaaagctcctcttgcgggtcaggttaacacaatggta
accacctcaaccaccaccactgttgctaaaacagttacagtcaccaagccaacaggagtc
agctttaagaaagatgtgccaccttctataaatacaacaaatatcgatacattgcttgtg
gccacagatcaaactgagaggattgtggagcccccagaaaatattcaagagaaaattgct
tttattttcaacaatctctcacagtcaaatatgacacagaaggttgaagagcttaaagaa
actgtgaaggaagaatttatgccttgggtttcccagtatctagttatgaaaagagtcagt
attgagccaaactttcatagcctatattcaaactttcttgatacattgaagaatcctgaa
tttaacaagatggttctgaatgaaacctacagaaacattaaagtgctgctgacttctgat
aaagctgcggccaatttctcagatcgttctttgctgaagaacttgggacattggttagga
atgattacattagctaaaaataaacccatcttacacacggacttggatgtgaaatctttg
ctgttagaggcttacgttaaaggacaacaagagttgctttatgtagtgccctttgttgcc
aaagttctagagtccagcattcggagtctggtttttagaccaccaaacccctggacaatg
gcaattatgaatgtattggctgagctgcaccaggagcatgacttaaagttaaacttgaag
tttgagattgaggtgctctgtaagaacctcgcattagacataaatgagctcaaacctgga
aacctgttgaaagataaagatcgcttgaagaatttagatgaacaactctctgctccaaag
aaagatgtcaaacagccagaagagcttcctgccatcacaacaacaacaacttctacaaca
ccagctaccagtactacgtgtacagccacagttccaccacagccacagtacagctaccat
gacatcaatgtctattctctagcaggcctggcacctcatattactttaaaccctacaatc
cctttatttcaagctcatccacagttgaagcaatgcgtgcggcaagcaattgaacgagct
gtccaggaactagtgcatcctgtggtggatcggtcaattaagattgctatgactacgtgt
gaacagatagtcagaaaggactttgccctggattctgaggaatctagaatgagaatagcc
gctcatcacatgatgcggaacttgacagctgggatggctatgattacttgcagggaacct
ttactgatgagcatatctaccaacctaaaaaacagttttgcctcagcccttcgtactgca
tccccacagcaaagggagatgatggaccaggccgctgctcagttagctcaggacaattgt
gaattagcttgttgttttattcagaaaactgcagtggagaaagcaggccctgagatggac
aagagattggcaactgaatttgagctgaggaaacatgctcggcaagaaggacgtagatac
tgtgatcctgttgtgttaacgtatcaagcagaacggatgccagagcagatcaggctcaaa
gttggtggtgtggacccaaagcagctagctgtctatgaagagtttgcacgaaatgtgcct
ggcttcttacctacaaatgacttaagtcagcctacagggtttttagctcagcccatgaag
caagcttgggcaacagatgatgtagcgcagatttatgataagtgtattacagaactggag
cagcacctacatgccattccaccaactttggccatgaatcctcaagcccaggctctccga
agtcttttagaggttgtagtgttgtctcggaattctcgggacgcgatagctgctcttgga
ttgctgcagaaggctgtagagggcttattagatgccacaagtggtgctgatgctgactta
ctgctgcgatacagggaatgccacctgttggtactgaaagctctgcaggatggcagggca
tatggatctccatggtgcaacaaacaaatcacaaggtgcctaattgaatgtcgagatgaa
tataaatataatgtggaggctgtggaattgttaattcgaaatcatttggttaacatgcag
cagtatgatcttcatcttgctcagtcgatggagaatggcttgaactacatggccgtggcg
tttgctatgcaactggtaaaaattcttctggtggatgaaaggagtgttgcccatattact
gaggcagatctgttccataccattgaaaccctcatgagaattaatgctcattccagaggc
aatgctccagaaggattgccccagctgatggaagtggtgagatccaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gaatatgatgaccctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggccgtgacagtaccaaagcattctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccaacaaggaatacttaaaactgatgac
ctcataacaaggttttttcgtctttgcactgaaatgtgtgttgaaatcagttaccgtgct
caggcggagcagcagcacaatcctgcggctaaccccaccatgatccgtgccaagtgctac
cacaacctggatgcctttgtccgcctcattgcactgttagtgaagcactctggggaggcc
accaacactgtcacaaagatcaacctgctcaataaggttctcggcatagtcgtgggagtt
ctcctacaggaccacgatgttcggcaaagtgaatttcagcaacttccctaccataggatt
tttatcatgctgctgttggagctcaatgcaccagagcatgtgctggaaaccatcaatttc
cagactcttaccgctttctgcaatacattccatatcttgaggcctactaaagctcctggc
tttgtatatgcttggcttgaattgatttcccatcggatctttattgcaagaatgctggca
catacgccacagcagaaggggtggcctatgtatgctcaactgttgattgatttattcaaa
tatttagcacctttccttagaaatgtggaacttactaaacctatgcaaatcctctacaag
ggtactctaagagtgctgctagttcttttgcatgatttcccagagttcctttgtgattac
cattatgggttctgtgatgtgatcccccctaattgtatccagttaagaaatttgatcctg
agtgccttcccaagaaatatgaggctcccagacccattcactcctaatctgaaggtggac
atgttaagcgaaattaacattgcaccccggatcctcaccaatttcactggtgtgatgcca
cctcagttcaaaaaagatttggattcctatcttaaaactcgatcaccagtcacttttctg
tctgatctgcgtagtaacctacaggtatctaatgagcctgggaatcgctacaacctccag
cttatcaacgcattggtgctctacgtagggactcaggctatcgcacacatccacaacaag
ggcagtacgccttcaatgagcaccattacccactcagcacacatggacatcttccagaat
ctggctgtggacctagatactgagggccggtatctcttcttaaatgcaattgcaaaccag
ctgcgctacccaaacagccacacgcactacttcagctgcaccatgttgtatctttttgcc
gaggccaacactgaggcaatccaggaacagatcacaagggttctcttggaacggttgatt
gtaaataggccacatccttggggtcttcttatcaccttcattgagctgattaaaaaccca
gcatttaagttctggaaccatgaatttgtacactgtgccccagagattgaaaagttattt
cagtctgttgcacagtgctgcatgggacagaagcaggctcagcaagtgatggaggggacc
ggtgccagttag
DBGET
integrated database retrieval system
