Mastomys coucha (southern multimammate mouse): 116099069
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Entry
116099069 CDS
T07224
Symbol
Polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116099069 (Polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcoc03021
]
116099069 (Polr1a)
Enzymes [BR:
mcoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116099069 (Polr1a)
Transcription machinery [BR:
mcoc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
116099069 (Polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
116099069
NCBI-ProteinID:
XP_031238021
LinkDB
All DBs
Position
Unknown
AA seq
1715 aa
AA seq
DB search
MLASKHTPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSANGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLL
VCQLRVLEVGALQAVYELERILSRFLEETTDPSASEIQEELEEYTSKILQNNLLGSQGAH
VKNVCESRSKLVANFWKTHMAAKRCPHCKTGRSVIRKEHNSKLTITYPAMVHRKSGQKDA
ELPEGVPAAPGIDEAQMGKRGYLTPSSAQDHLFAIWKNEGFFLNYLFSGLDDIGLESSFN
PSMFFLDFIVVPPSRYRPINRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPC
EITELTIDKENDSSVAIDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEK
YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVT
PWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPATGAPKPQ
GTKVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDE
MNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQY
MELVYRGLTDKVGRVKLFPPAILKPLPLWTGKQVVSTLLINIIPEDYARLNLSGKAKIGS
KAWVKEKPRPVPDFDPDSMCDSQVIIKEGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET
SGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQCGPRAVRAALNL
PEAASCDEIQGKWQDAHLGKDQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENN
LQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTG
RFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGS
VVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRTDPQKVLRHSKAIK
KWHHKHPSALLRKGAFLSFSQKIQAAVQALNLKGKTQNGRSPETQQMLQMWYELDEQSRR
KYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDYSQEWAAQAEKSYKKSELSLDSLR
TLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM
VASANIKTPMMSVPVFNTKKALKRVKSLKKRLTRVCLGEVLQKVDIQESFCMGEKQNKFR
VYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKNSKASAFRSVNTRRAT
QKDLDDTEDSGKNRREEDRDEEEEGNIVDAEAEEGDADASDTRRKEKQEEEVDYESEEEG
EEEEEDIQEEGDIKGEGAHQGHEPDEEEGSGLEEQSSQDPPHRHSRPQGAEAMERRIQAV
RESHSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHNAIVYTTKGITRCLLN
ETTNNKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEI
KDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLKQAT
MMGSHDELKSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgctagcctccaagcacacaccatggaggaggcttcagggcatttccttcgggatgtat
tcggccgaggagctcaagaagttaagtgttaaatccattacaaatcctcgctatgtggac
agcctgggaaacccttcagcaaatggcctgtatgatttggctttgggtcctgcagattcc
aaagaagtatgctctacctgcgtgcaggacttcaacaactgctctggacacctgggccac
attgatctcccgctcacagtctacaaccctctcctcttcgataaactctacctgctgctc
cgaggttcctgtttaaattgccacatgctgacttgtcctcgggctgcaatccacctattg
gtctgccagctgagggtcctggaagtcggagccctgcaagcagtctacgagcttgaacga
attctcagcaggtttctggaagaaactacggatccttctgcctctgaaattcaagaagag
ttagaagagtacacaagcaaaattctgcagaacaacctcttggggtcccagggtgcacat
gtgaaaaatgtgtgtgagagcagaagcaaacttgtcgctaacttctggaagacacacatg
gctgctaagcgctgtccacactgcaagactggacggtcagtgattcggaaggagcacaat
agcaagctaacaatcacgtacccagccatggtacacaggaaatcaggccagaaggatgca
gaactcccagaaggagtcccagcagctccaggaattgacgaggctcagatggggaagcga
gggtacctgaccccaagcagcgcccaagatcatcttttcgccatttggaagaatgaagga
ttcttcctgaattatcttttttcgggattggatgatattggcctggagtccagtttcaac
cccagtatgttctttctagatttcatagtggtaccgccatccaggtatcgtcccatcaat
cgcctgggtgaccagatgttcactaatggccagacagtaaacttgcaagctgtcatgaag
gatgcagttttgatccggaaacttctggcactgatggcccaagaacagaaactgccctgt
gagataacagaactcaccatagacaaggaaaatgattcctcagttgctatcgaccgatcc
tttctaagtttgcttccaggccagtctctcacagataaactttacaacatttggattcgc
cttcagagccacgtcaatattgtgtttgacagtgagatggataaattgatgttggaaaag
taccctggcataagacagatcttagagaagaaggaaggcctgttccggaagcacatgatg
ggcaagcgagttgactacgcagcccgctcggtcatctgccctgatatgtacatcaacacc
aatgaaattggaatccccatggtatttgccacaaaactgacttacccccagccagtgacc
ccctggaacgtgcaggaactgaggcaggcagtcatcaatggacccaatgtgcacccagga
gcctccatggtcatcaatgaggatggcagtcgcacagccctgagcgcagtggatgctacg
cagcgggaagctgtggccaaacagctcctgacaccagccacaggggctcctaagcctcag
gggacaaaagttgtgtgtcggcacgtgaagaatggggacatcctcctcctgaaccgacag
cccaccttgcacagaccctccatccaggcccaccgtgcccacattctgcctgaagagaaa
gtcctacgccttcactacgccaactgcaaggcctacaatgctgactttgatggagacgag
atgaatgcccacttcccgcagagtgagttgggcagagctgaagcctacgtcctggcctgc
actgatcagcagtatcttgttcccaaggatggccagccattggcaggattgatccaagat
cacatggtttcaggtgcaaacatgaccattcgtggatgctttttcacccgggaacagtac
atggagctggtgtaccgggggctcacagacaaagtgggacgtgtgaaactctttcctccc
gccatcctgaagcctttgccgctgtggacagggaagcaggttgtgtcgaccctcctcata
aacataattccagaggactacgcccgcctgaatttatctggaaaggcaaaaatcggcagt
aaagcctgggtaaaggaaaagccacgacctgttcccgattttgaccctgactccatgtgt
gattcccaggtgatcatcaaggaaggggagctgctctgtggagtactggacaaggcacac
tacgggagctctgcctacggcctggtccattgctgctatgagatctatgggggtgagacc
agcggcagggttctcacctgcctagcccgcctcttcactgcctacctacagctctataga
ggtttcaccttgggtgtagaagacattttggttaagccaaatgcagatgtgatgagacag
cgcatcattgaagaatctacccagtgtggaccccgggctgtcagggctgcattgaacctg
ccagaagctgcatcatgtgatgagatccaagggaaatggcaggatgcccatctgggcaaa
gaccagagggattttaacatgattgatatgaagttcaaggaggaagtgaaccattacagc
aatgagattaacaaggcgtgtatgccttttggcttgcacagacagttcccggagaacaac
ctgcagatgatggtgcagtcgggagctaaagggtcaactgtgaacacaatgcagatctct
tgcctgctgggccaaattgagttggaaggtcggagacccccactgatggcgtctggcaag
tcactgccctgctttgagccttacgagttcacccccagggctggtggctttgtcactgga
aggttccttaccggtatcaggccccctgagttcttcttccactgcatggcggggcgagaa
ggcctagtggacactgctgtcaaaaccagccgttctggctatctccaaaggtgtatcatc
aagcacctggagggactggtcatccagtatgatctgacagtccgtgacagcgatggcagc
gtggtacagttcctgtatggagaggacggcctggacatccccaagacacagttcctacag
cccaagcagttcccttttctggccagcaattatgaggtgataatgaaatccaagcatctt
catgaagttttatccagaacagatccccagaaagtgctccgccactccaaagccattaaa
aaatggcatcacaagcatcccagtgccctgctgagaaaaggcgccttcctgagtttttcc
cagaagatccaggcagctgtgcaagccttgaacctaaagggcaagacccagaatggccgc
agcccagagacccagcagatgttacagatgtggtatgaactggatgagcagagccgacga
aaataccagaagagggccgccccgtgtcccgaccctagcctttctgtgtggcgcccagac
atctactttgcatctgtgtctgaaacatttgaaaagaagattgatgactacagtcaggaa
tgggcagctcaagcagagaagagttacaagaaatcagagctttccctcgacagcctgagg
accttactgcagctaaagtggcagcgctcactgtgtgacccaggagaggctgttggcctg
ctggccgcccagagcatcggagagccctccacacagatgacactgaacaccttccacttt
gcaggcagaggcgagatgaacgtcaccctgggcattccaagattgagggagattctcatg
gtggccagtgccaacatcaaaacgcccatgatgagcgtgcctgtgttcaacaccaagaaa
gcattgaagagagtgaagagtctgaagaagcggctcaccagggtgtgcctgggggaggta
ttgcagaaagttgacatccaggagtccttctgcatgggagaaaaacagaataaattccgg
gtgtatgagctccggtttcagttcctgccacatgcatattaccagcaggagaagtgcctg
agacctgaggacatcttgcacttcatggaaaccagattctttaagctactaatggaagct
atcaaaaagaagaatagcaaagcatcagccttcagaagtgtgaatactagaagagctaca
cagaaggacctcgatgacactgaggactcggggaaaaatcggagagaggaggacagggat
gaggaagaggaagggaacattgtggatgctgaagctgaggagggggatgcagatgcttct
gacaccagacgcaaggaaaagcaagaagaagaggttgactatgagagtgaggaagaaggg
gaggaggaagaggaggatatacaagaagaaggggacatcaaaggggaaggtgcccaccag
ggccatgagccagatgaggaagaaggttcaggcctcgaggagcaatcatcccaggaccct
ccccaccgccactccaggcctcagggagctgaggccatggaacgccggatccaggctgta
cgggagtcccactcgttcattgaggactaccagtatgacacagaggagagcctgtggtgc
caggtgactgtgaaactcccactgatgaagattaattttgacatgagctccttggttgtg
tccttggcccacaatgccattgtctatacaaccaagggcatcactcggtgcctcctgaac
gaaacaaccaacaataagaatgagaaggagctcgtgctgaacacagagggaatcaacctc
cctgagctgttcaagtactccgagatactggacctgcgccgcctctactccaacgacatc
catgccatggccaatacttacggcatcgaggctgcgctgcgggtgatagaaaaggagatt
aaggatgtgttcgctgtgtatggcattgcagttgatcctcgccatctctccctggtggct
gattacatgtgttttgagggtgtttataagccgctcaatcgcttcgggatccagtcaagt
tcctcccctttgcaacagatgacatttgaaaccagcttccagtttctgaaacaggccacc
atgatgggatcccatgatgaactgaagtcaccttctgcctgcctcgtggtgggaaaggtc
gtcaaaggcgggacaggcctgtttgagctcaagcagcccctaagatag
DBGET
integrated database retrieval system
