Mucilaginibacter daejeonensis: LLH06_17080
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Entry
LLH06_17080 CDS
T07909
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mdj
Mucilaginibacter daejeonensis
Pathway
mdj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mdj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LLH06_17080 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdj03021
]
LLH06_17080 (rpoB)
03400 DNA repair and recombination proteins [BR:
mdj03400
]
LLH06_17080 (rpoB)
Enzymes [BR:
mdj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LLH06_17080 (rpoB)
Transcription machinery [BR:
mdj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LLH06_17080 (rpoB)
DNA repair and recombination proteins [BR:
mdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LLH06_17080 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Sds3
Motif
Other DBs
NCBI-ProteinID:
UEG52666
LinkDB
All DBs
Position
complement(3987876..3991679)
Genome browser
AA seq
1267 aa
AA seq
DB search
MANKNNQRVNFATSRHVLDYPDFLDVQLKSFQEFFQLETTSDNRHKEGLFKVFAENFPIS
DSRNIFVLEFLDYFIDPPRYDIQECIDRGLTYSVPLKAKLRLSCNDEEHEDFETIVQDVY
LGTIPYMTPKGTFVINGAERVIVSQLHRSPGVFFGQSRHTNGTKLYSARVIPFKGSWIEF
ATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFELADEVKVSKSGLKKFVGRKL
AARVLKKWVEDFVDEDTGEVVSIDRNEIILERETILDDNNIDMIIDAGVKSIILNKEDAA
TSGDYTIIYNTLQKDTSNSEKEAVEHIYRQLRNAEPPDEETARGIIDRLFFSDKRYDLGD
VGRYRINRKLKLDTSDEIKVLTKQDIIAIVKYLIKLINSKAEVDDIDHLSNRRVRTVGEQ
LYAQFGVGLARMARTIRERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHA
KINNLGFIETPYKRVDNGVVAVDEPVIYLSAEDEDGKTIGQANAVYNDQGVFDSPRVKAR
FEGDFPVIEPERLDYMDIAPNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEA
PIVGTGLEGRVAKDSRTLINAEGDGVVEYVDANEIRIRYDRNDDDRLVSFDDDTKGYRLI
KFQKTNQSTTMNLKPIVTKGQRVSKGEVLCEGYATQNGELALGRNMKVAFMPWQGYNFED
AIVISERVVSQDIFTSIHVEEFELEVRDTKRGEEELTPDIPNVSEEATKDLDEDGIIRVG
AEVKEGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKTPPSISGVVIDTKLF
SRAKKTSKAEEKAQLEKLDNKHEKAIKDLKNRLVDKLFEIVNGKTSQGVYNVYKELLVAK
GVKFTQKTLAELNYENINPTKWTTDDDKNDQIKVLLHNYGIKVNEELGAYRRDKFAISVG
DELPSGIVQMAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLN
PLGVPSRMNLGQIYETVLGWAGKELGVKFATPIFDGATYAEVEDWIAKAGLPATGRTYLH
NGLTGERFDQPTTVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEM
EVWALEAFGAANILQEILTVKSDDVIGRAKTYEAIVKGENLPTPSVPESFNVLVHELRGL
GLDITLE
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaacaaaaataaccaaagagtgaactttgcgaccagcaggcacgtccttgactac
cctgacttcctggacgtacagttgaaatcttttcaggaatttttccagctggaaaccact
tcggacaaccgtcacaaggaaggcttgttcaaagtgtttgccgaaaactttccgatctcc
gattctcgtaacatcttcgtgttagagtttctggattactttattgatccgccacgctac
gatatacaagagtgtatcgaccgtggtttgacttacagtgtgccattaaaagccaagctg
cgcctgtcatgtaatgatgaggagcatgaggactttgaaacgatcgtgcaggatgtgtac
ctgggtaccattccttacatgacgccaaaaggtacatttgtgatcaatggcgctgagcgc
gttatcgtatctcagctgcaccgttcgccaggtgtgttctttggccaaagccgccatact
aacggtactaaattgtactcggcccgtgtgatcccgttcaagggttcatggatcgagttc
gctactgacgtgaacaacgtgatgtacgcgtacattgaccgtaagaaaaaattcccggta
actactttgctgcgtgccatcggttacgattcagacaaggacatccttgagctgttcgaa
ctggccgatgaggttaaggtaagcaagtcaggtctgaaaaaattcgttggccgtaaactg
gctgcgagagtgcttaagaaatgggtggaagattttgtggacgaggataccggtgaagtg
gtatcgatcgaccgcaatgagatcatccttgagcgcgagaccatactggatgacaacaat
attgacatgatcattgatgctggcgtgaaaagcattatcctgaacaaagaggatgcggcc
accagcggtgattataccattatatataataccctacaaaaagatacttcgaactctgag
aaggaagcggtagagcacatctaccgtcagttgcgtaacgccgaaccaccagatgaagag
accgcccgcggtatcatcgatcgtttgttcttctcagataaaagatatgacctgggtgat
gtaggtcgttaccgcatcaaccgtaaactgaagcttgatacctctgatgagatcaaggtt
ttgaccaagcaagacattattgccatcgttaaatacctgatcaaactcatcaactcaaaa
gctgaggtggatgatatcgatcacttgtcaaaccgtcgtgtacgtacggtaggtgagcag
ttgtatgcccagttcggtgttggtttggcccgtatggcccgtaccatccgtgagcgtatg
aacattcgtgacaacgaggtgttcacgcctaccgatctgatcaacgcgcgtacgctgtcg
tcagtgatcaactctttcttcggtaccaaccagttatcacagttcatggatcaaaccaat
ccattggccgagataactcacaagcgccgcttgtcggcccttggtcccggtggtctgtca
cgtgagcgtgccggtttcgaggtacgtgacgttcactatacccactacggtcgtttgtgt
accatcgagaccccggaaggtccgaacatcggtctgatctcgtcactttgcgttcacgcc
aagatcaacaacttaggcttcatcgagactccgtacaaacgtgtagataacggtgtggta
gcggttgatgagccggttatctacctctctgcagaggatgaggacggcaagaccatcggt
caggctaacgcagtgtacaatgatcagggtgtatttgatagcccacgcgttaaagcacgt
ttcgagggtgacttcccggttattgaaccagagcgtttggattatatggatatcgcgcct
aaccagatcacttcgatcgcggcgtcgcttatcccgttccttgagcatgatgatgctaac
cgtgcgttgatgggttcgaacatgcaacgccaggccgttccacttttacgccctgaggcg
ccgatagtgggtactggtctggaaggccgtgtagcgaaagactctcgtaccctgatcaac
gccgaaggcgatggtgtggtagagtatgttgacgctaacgagatccgcatccgttatgat
cgtaacgatgatgatcgtttggtatcatttgatgatgacaccaagggttaccgtttgatc
aagttccaaaagaccaaccaaagtactaccatgaaccttaaaccgatcgtgaccaaaggt
cagcgcgtgtcaaaaggtgaggtgttgtgcgaaggttatgctactcagaacggtgagctt
gcactgggccgtaacatgaaggtcgccttcatgccttggcaaggttacaactttgaggat
gcgatcgtgatctctgagcgtgtagtatcacaagatatctttacttctatccacgtagaa
gagttcgaacttgaagttcgtgacaccaaacgtggtgaagaggaattgacaccagatatc
cctaacgtatcagaagaagccactaaagaccttgacgaggacggtatcatccgtgttggt
gctgaggttaaagaaggcgatatcctgatcggtaagatcactcctaaaggtgagtcggat
ccttcaccagaagagaaattgttacgtgcgatctttggtgacaaagccggtgacgtaaaa
gacgcttcgttgaagacccctccatcgatcagcggtgtggttatcgatactaaattattc
tcacgtgctaaaaagacctctaaggccgaagaaaaagcacagttagagaaactggataac
aagcacgaaaaggctatcaaggaccttaaaaatcgcttggtcgacaagttgttcgagatc
gtgaacggtaagacatcacaaggtgtttacaacgtttacaaagagctgctggtagctaaa
ggtgttaaattcacccaaaaaacactggccgagcttaactacgagaacatcaaccctacc
aagtggaccactgatgatgacaagaatgaccagatcaaagttctgcttcataactatggc
attaaggtgaatgaggaactgggtgcttatcgtcgtgataaattcgcgatcagcgtaggt
gacgagcttccatcaggtatcgtgcaaatggccaaagtttacatcgctaaaaagcgtaag
cttaaagtgggtgataaaatggcaggccgtcacggtaacaaaggtatcgtggcccgcatc
gttcgtgatgaggatatgccgttcctggaagatggaacaccagttgatatcgtgttgaac
ccactgggtgtaccttcacgtatgaacttgggtcagatctacgagaccgtgttaggttgg
gccggtaaagagcttggtgtcaaatttgccaccccgatctttgatggtgctacttatgca
gaggttgaggactggatcgctaaggcaggtttaccagctacaggccgtacatacttacat
aacggcttgaccggtgagcgttttgatcagcctaccaccgtaggtatcatctacatgctt
aaactaggtcacatggtcgatgataagatgcacgcccgttcgatcggtccgtactcgttg
atcacgcaacaaccattgggtggtaaagcccagttcggtggtcagcgttttggtgagatg
gaggtttgggcactggaagcattcggtgcagccaacatcctgcaagagatcttgaccgtt
aaatctgatgacgtgatcggtcgtgctaaaacgtacgaggcgatcgttaaaggtgagaac
ctgccaactccatcagttcctgaatcattcaacgtattggttcatgagcttagaggttta
ggtttggacatcactttagaataa
DBGET
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