Malus domestica (apple): 103402927
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Entry
103402927 CDS
T03194
Name
(RefSeq) probable pectate lyase 3
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm00040
Pentose and glucuronate interconversions
mdm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103402927
Enzymes [BR:
mdm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103402927
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
YMF19
Pus10_THUMP_arc
Motif
Other DBs
NCBI-GeneID:
103402927
NCBI-ProteinID:
XP_008339934
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All DBs
Position
16:complement(join(5352693..5352914,5353150..5353392,5353630..5354290,5354455..5354687))
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AA seq
452 aa
AA seq
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MAAMFNSSYFFLCLFFLSFAVFVSSHDDPTDVPNEDTQVLDLDAYWKQRAEEAEKEALES
YNKNPEQVTEEFNNEVGKLMLKENTTRRNLRGNKAYKGPCMATNPIDACWRCDPYWANNR
KKIVGCAQGFGKKATGGKDGPFYVVTMGTDDDVQNPKPGTLRHAVIQKGPLWIIFAKSMV
IRLQQELMVTSDKTIDARGANVVIEEGAGITLQFVKNVIITNLHIKMIVPKPGGMIRDSV
DHIGLRTQSDGDGISLFGASNVWIDHVSMSRCADGLIDAVMGSTSITISNSHFTDHDEAM
LFGANNAHTQDKIMQITLAFNHFGQGLVQRMPRVRHGFFHVVNNDYTHWIMYAIGGNMNP
TIISQGNRFIAPINGVTKQVTHRENTPEAEWKNWEWRSEGDLMMNGAFFVESGSGASKHP
AKLDMMPFKPGTFVATLTKFSGALNCAVGKPC
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgatgtttaactcgtcctatttctttctatgtttgtttttcttgtcctttgct
gtattcgtttcgagccacgatgatccaaccgatgttccaaatgaagatacgcaggtatta
gatttagatgcgtactggaaacaacgagccgaagaagctgaaaaggaggccctggaatcc
tacaataaaaatcctgagcaagtcactgaagagttcaataatgaagttggcaagcttatg
ttaaaggaaaacaccacaagaaggaacttgaggggtaacaaggcttataagggtccatgc
atggcgaccaacccaattgacgcctgctggaggtgtgacccttattgggctaacaaccga
aagaagatcgtaggctgcgcccaaggctttggtaaaaaggccaccggaggtaaggatggt
cctttttacgtggtaacaatgggcacagatgatgacgtgcaaaaccctaaacccggaact
ctacgccacgccgtgattcagaaagggcctctgtggatcatcttcgcaaaaagcatggtg
attaggctgcagcaagagctgatggtgactagtgacaagaccattgatgctaggggagcc
aatgttgtgatagaagagggtgctggcattaccctgcagtttgtgaagaatgtaatcatc
accaaccttcacataaaaatgattgtccccaaacccggtggcatgatcagggactctgtc
gaccacataggtttaaggacccagagtgacggcgatggtatctccctctttggtgcctcc
aacgtctggatcgatcacgtttccatgtccaggtgcgcagatgggctcatcgacgccgtc
atgggttccacctccatcaccatctccaactcccacttcacggaccacgatgaggcgatg
ttgtttggtgccaacaacgcccacactcaagacaaaatcatgcaaattactttggccttc
aaccactttggtcagggactggtgcagaggatgccaagggtccggcacggattcttccac
gtggtgaacaacgactacacccactggatcatgtatgccatcggaggaaacatgaaccct
accatcatcagccagggtaacaggttcattgctcccattaacggggtcaccaaacaggtg
acccatagggagaatacaccagaggcagagtggaagaactgggaatggagatctgaggga
gatttgatgatgaatggagctttctttgttgaatctggatcaggagccagcaaacaccca
gcaaagttggacatgatgcccttcaaaccagggacctttgtcgcaacgctcacaaaattt
tccggtgctctaaactgcgctgtcggcaaaccctgctag
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