KEGG   Malus domestica (apple): 103403591
Entry
103403591         CDS       T03194                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03040  Spliceosome
mdm04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103403591
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    103403591
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdm03041]
    103403591
   04121 Ubiquitin system [BR:mdm04121]
    103403591
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103403591
Enzymes [BR:mdm01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     103403591
Spliceosome [BR:mdm03041]
 Complex B
  Other components
   Prp19 complex
    103403591
 Complex C
   Prp19-CDC5 complex
    103403591
Ubiquitin system [BR:mdm04121]
 Ubiquitin ligases (E3)
  U-box type E3
   103403591
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    103403591
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Prp19 Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_EML Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_WDR41 WD40_like eIF2A zf-Nse Beta-prop_DCAF4 U-box Beta-prop_VPS8 PUMA_CC PAN2_N KNTC1_N PAS_11 ATPD_C_fung TPR_MLP1_2
Other DBs
NCBI-GeneID: 103403591
NCBI-ProteinID: XP_008340660
LinkDB
Position
16:join(21912724..21912736,21912867..21912952,21913105..21913176,21913397..21913459,21914014..21914100,21916919..21917063,21917153..21917271,21917472..21917588,21918082..21918177,21918265..21918324,21918796..21918870,21923207..21923311,21923774..21923890,21923963..21924040,21924129..21924222,21924541..21924592,21925144..21925214,21925313..21925428)
AA seq 521 aa
MNCALSGEVPEEPVVSKKSGLLFEKRLIERHISEYGKCPVTGEPLTADDIVPVQTGKIVR
PRPAQAASIPGMLGMFQLEWDSLMLANFAMEKQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQIPAAQSVVAANASVHSNGTPVADDQQGPGASNIRPGISASILEKM
TECNVTLSQQRKMRQISPTLAPVDALERYTLISSHPLHRTSKPGILSIDIQSNKNLIATG
GVDTNAVIFDQPSGQIISTLSGHSKKVTSVKFVGRDDMFISGSADKTVRIWQGSDDGNYN
CRHILKDHTAEVQAVTVHATGDYFVTASLDSTWCFYNIASGLCLTQVEDASASEGYTSVA
FHPDGLILGTGTSEALVKIWDVKGQSNVATFEGHVGAITAIAFSENGYFLATAASDGIKL
WDLRKLRNFKKFTPYDVEPTNCVEFDYSGNYLAAAGSDIRIIQTASVKSEWNTIKTFPDM
SGTGKATSVKFGPDANYIAVGSMDRNLRIFGLPGVDGAMES
NT seq 1566 nt   +upstreamnt  +downstreamnt
atgaactgcgcactatccggcgaggtgccggaagagcctgtggtctccaagaagtccggg
ttgctcttcgagaagcgtttaatcgagcgacatatctcggaatatgggaaatgcccggta
accggtgaaccacttaccgctgatgatatcgttccagttcaaacggggaagatagtgagg
ccccgacctgcacaagctgctagtattcctggaatgctcggaatgttccagcttgaatgg
gacagtttgatgctagccaactttgcaatggagaaacaactacatacagcaaggcaagag
ttgagtcatgctttgtatcagcatgatgctgcatgccgtgttattgcaagactcaaaaaa
gaaagggacgaagcaaggtcattacttgctcaagctgagagacaaattcccgcagcacaa
tcagtagttgcagcaaatgcttctgtccatagcaatggaacgccagttgctgatgaccag
cagggacctggtgcgagcaatatacgacctggaatatctgccagtatcctagagaaaatg
accgaatgtaatgtaactctttcacagcagcggaagatgcggcagatatccccaacatta
gctccagttgatgcgttggagaggtatactctgatatctagtcatcctcttcatagaaca
agcaaaccaggaattttatcgattgatattcagtctaacaagaatctcattgcaactgga
ggggttgatacaaatgctgtaatctttgatcagccatcagggcaaataatatctactctt
agtggtcattcaaagaaggttacaagcgtgaaatttgtaggtcgggatgatatgttcata
agtgggtcagcagacaagacagttcgcatatggcaaggctctgatgatgggaactataac
tgtaggcacattttgaaggaccatactgctgaggtgcaagctgttactgtgcatgccact
ggggactactttgtgactgcttctcttgatagtacatggtgcttttacaatattgcctct
gggttatgtctaacacaggttgaggatgcttctgcttcggaaggctatacatccgttgca
tttcatcctgatggtctcattcttggaactggcacctcagaggctcttgtgaaaatttgg
gatgtaaagggtcagtcaaatgttgcaacatttgagggacatgttggcgcaataactgca
atcgccttctctgagaatggttactttcttgcgactgcagctagtgatggcattaagttg
tgggatctacgaaaattgaggaacttcaagaaatttactccctacgatgttgaaccaaca
aactgtgttgaatttgactacagtggaaattaccttgctgctgcaggctctgatataaga
atcatccaaacagctagcgtcaaaagtgaatggaacactataaagactttccctgacatg
tctggcacaggtaaagcaacaagtgtgaagtttggaccagatgcaaattatattgcagta
ggatctatggaccgaaaccttcgcatttttggcctgcccggcgtagatggtgcaatggag
tcctga

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