Malus domestica (apple): 103424171
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Entry
103424171 CDS
T03194
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm00040
Pentose and glucuronate interconversions
mdm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103424171
Enzymes [BR:
mdm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103424171
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103424171
NCBI-ProteinID:
XP_008360481
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All DBs
Position
13:complement(join(22446288..22446509,22446603..22446741,22446872..22446975,22447066..22447708,22448450..22448524,22449101..22449154,22449505..22449608))
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AA seq
446 aa
AA seq
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MAVFESKKKWVGAFVTVLLVCCFAAAMVFEISRNSNGGTEELQSSSNLSMAARVAEDDEG
FNKHAVEDPEEIASMVDMSIRNSTERRKLGYFSCGTGNPIDDCWRCDPNWHKNRKRLADC
GIGFGRNAIGGRDGRFYVVTDPNDDDPVNPRPGTLRHAVIQTKPLWIVFKRDMVIRLKQE
LIMNSFKTIDGRGVNVHIANGGCITIQFVTNIIIHGLHIHDCKPTGNALVRSSPTHFGWR
TMADGDAVSIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSD
SYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQG
NRYAAPTNPFAKEVTKRVETAATKWKNWNWRSEGDLLLNGAYFTPSGAGASASYARASSL
GAKSSAMVGAITSGSGALPCRRGHPC
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtttgagagtaagaagaaatgggtcggtgcgttcgtgacggtgcttctcgtg
tgttgcttcgcagctgctatggtcttcgagatctctcgcaacagcaatggaggaacagag
gagttgcagagctcgagcaacttgtcaatggcggccagagtggctgaggatgatgaagga
ttcaataagcatgcagttgaagacccagaagagattgcttctatggttgacatgagtatc
cgcaacagcacggagaggaggaagctgggctacttctcgtgtggaactggcaatccaatc
gatgactgctggcgctgtgatcccaactggcacaaaaaccgcaagcgtcttgcagactgt
ggcattggttttgggagaaatgccattggtggccgcgatggacgcttctatgttgtcacc
gaccctaatgatgatgatcctgttaaccccaggcctggtactcttcgccatgctgtcatc
cagaccaagcctctctggattgtgttcaagcgagacatggtgatacggttgaagcaggag
ctcatcatgaacagcttcaagaccattgatggtcgcggagtcaatgttcacattgctaat
ggaggatgcatcacaatccaatttgttacaaatattatcatccacggcctgcacatccat
gactgcaagcccactggcaatgctttggtgaggagctcgcctactcactttgggtggcgg
acaatggctgatggagatgctgtctccatcttcgggtcaagccatatttgggttgatcac
aattccctctccaactgcgctgatggtctcgttgatgctgtcatgggctcaactgcaatt
accatttccaacaaccacatgacccaccacaatgaggtgatgctgctgggccacagtgat
agctataccagagacaagcaaatgcaagtcaccattgcttacaaccactttggagaggga
cttatccaaagaatgccaaggtgcaggcacgggtatttccatgtcgtgaacaatgactac
actcactgggaaatgtatgccattggtgggagtgcagaacccactatcaacagccaaggc
aacagatatgctgctccaaccaacccctttgcaaaggaggttaccaagagggttgagacg
gctgccactaaatggaagaactggaactggagatcagaaggagacctgctgctcaatggt
gcctacttcactccatctggagctggagcttcagcaagctacgccagggcctcaagcttg
ggagccaagtcatctgccatggttggagccataacttcaggttccggtgcacttccctgc
cgcagaggccacccctgctag
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