KEGG   Malus domestica (apple): 103425218
Entry
103425218         CDS       T03194                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
mdm  Malus domestica (apple)
Pathway
mdm03030  DNA replication
mdm03410  Base excision repair
mdm03420  Nucleotide excision repair
mdm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103425218
   03410 Base excision repair
    103425218
   03420 Nucleotide excision repair
    103425218
   03430 Mismatch repair
    103425218
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mdm03032]
    103425218
   03036 Chromosome and associated proteins [BR:mdm03036]
    103425218
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103425218
DNA replication proteins [BR:mdm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    103425218
  DNA Replication Termination Factors
   ELG1-RFC complex
    103425218
Chromosome and associated proteins [BR:mdm03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    103425218
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     103425218
  Check point factors
   HRAD17(Rad24)-RFC complex
    103425218
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 AAA_22 AAA_11 AAA_16 AAA_30 AAA_5 AAA_24 AAA_assoc_2 AAA_14 AAA_7 DUF815 RuvB_N nSTAND_NTPase5 ATPase_2 ResIII AAA_19 bpMoxR TniB AAA_2 SLFN-g3_helicase nSTAND3 DNAX_ATPase_lid Mg_chelatase AAA_3 MCM AAA_28 TIP49 ABC_tran nSTAND6
Other DBs
NCBI-GeneID: 103425218
NCBI-ProteinID: XP_028949485
LinkDB
Position
15:complement(join(41391774..41391873,41392175..41392243,41392325..41392388,41392502..41392631,41392926..41393007,41393218..41393377,41393465..41393553,41395922..41396138,41396566..41396752))
AA seq 365 aa
MAEPITLMDIDEDDNSSLKPSYNKGKNVAVAAPSPGKATPWVEKYRPHSLADVAAHRDIV
DTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR
QQIQDFASTQSFSFGGESAKSSVKMVLLDEADAMTKDAQFALRRVIEKYTKNTRFSLICN
HVNKIIPALQSRCTRFRFAPLEEFHVSERLKHVIEAEGLDVPASGLAAVVGLSNGDMRKA
LNILQSTHMASQQITEEAVYLCTGNPLPKDIEQMSYWLLNDSFAGSFKTISDMNARKGLA
LIDIVREVTMFIFKIKMPAGVRVQLINDLADIEYRLTFGCNDKLQLGSLIATFTKARSAL
VAAAK
NT seq 1098 nt   +upstreamnt  +downstreamnt
atggcggagccaatcactctcatggacatcgacgaagatgacaattcatctctaaaaccc
agctacaacaaaggcaaaaacgtcgccgtcgctgccccttcccccggcaaagccacgccg
tgggtcgagaagtaccgccctcattccctcgcggacgtcgctgctcaccgcgacattgtc
gacaccattgataggctcactactgagaaccgattgccacacctcctattgtatggtcct
cctggaactggcaaaacttcaacgatacttgctgtggcacgcaagctgtatggagcacag
taccacaatatgattttggagttgaatgcatccgatgacagggggatcgatgttgtgcga
caacagattcaagattttgctagcacacagagtttctcgtttgggggtgagagtgcaaag
tcatctgtcaaaatggtcttgcttgatgaggcagatgctatgacaaaggatgctcaattt
gctttgcgaagagtgattgagaaatacacaaagaacactaggttctcactaatctgcaat
catgtcaacaagattattccagcattacaatccagatgtactcgttttcgatttgctcca
cttgaggagtttcatgtctcagagagacttaaacatgttatagaagctgaagggcttgat
gtgcctgcgagtggtttagcggcagttgtagggcttagcaatggtgacatgagaaaggct
ttgaacattttgcagtcaactcatatggcttcacagcagataactgaagaagcagtatat
ctttgcacaggaaatccattgcccaaagatattgagcaaatgtcttactggcttttgaac
gattcatttgctgggagtttcaaaacaatatctgatatgaatgcaagaaaaggattggct
ttgatagatattgtaagagaagtgaccatgttcatttttaagattaagatgccagcaggt
gttcgcgttcagttgattaatgatttagctgacatagagtacaggttgacctttgggtgc
aacgataagttgcaactcggatcactgatagccactttcacaaaagctcgatcggcactt
gttgctgctgccaagtag

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