Malus domestica (apple): 103436682
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Entry
103436682 CDS
T03194
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103436682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103436682
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103436682
Spliceosome [BR:
mdm03041
]
Complex A
U2 snRNP components
U2 related factors
103436682
Complex B
103436682
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
103436682
NCBI-ProteinID:
XP_028960166
LinkDB
All DBs
Position
06:complement(354066..357584)
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AA seq
1172 aa
AA seq
DB search
MEEVKHKSRKEGESKRSHRDRDREKERNGERHRDKDKDKRDRDSRRYEREKSSDSDERYD
MEKHGDRDSDRKRNRDDERERTRDKKRDKDKERDKDKEKEKRDRTREKEKEREKERQREK
EREREKERQREKEKEKEKEREREREREREKEKERERERERREREREIEDKREREREREKD
RDRERRVRERERRRDIDADDTDDDGRERDRKRPRKDNNDYKERERERSSSRSKRHRDDGD
GSPRKKSDEGDSSEEEQPTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEETEREKN
GEGDADEPKSGKAWTLEEESDDEEVPSLEKSETGIDVDEEDNHTDRKVGDAMAVVSEDET
AAPTLHNGADDAADDEEVDPLDAFMNSMVLPEVEKLTNAVEPSIVDEKNKDKKDGRNNGE
QPRRGSNKSMGRIIPGEDSDSDYGDLENDDDPVEDEGDDEFIKRVKKTKAEKLAVVDHSK
IDYDPFRKNFYIEVKEMSRMTPEEVGVYRKQLELKIHGKDVPKPIKTWHQTGLTSKILET
IKKLNYEKPMPIQAQAVPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGP
IGLIMAPTRELVQQIHSDIKKFTKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRM
IDILCTSGGKITNLRRVTYLVVDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ
VEVLARKVLNRPVEIQVGGRSVVNKDITQLVEVRMENERFLRLLELLGEWYEKGKILIFV
ESQNKCDALFRDLLRHGYPCLSLHGGKDQTDRESTITDFKSNVCNLLVATSVAARGLDVK
ELELVINYDSPNHYEDYVHRVGRTGRAGRKGCAITFISGEDARYAPDLVKALELSEQVVP
DDLKSLADNFTAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSD
SEDEDDGIRKAGGDISQQAALAQIAAIAAASKASTASMQTPASAAQLLPSSGLPVSLPGV
LGLALPGTAAVAAGTSLPLVGNDGAARAAAIAAAMNLQHNLAKIQADAMPEHYEAELEIN
DFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKVTGPGDRKLYLFIEGPTEQSVK
RAKTELKRVLEDISNQALSLPGGAQQGRYQVL
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggtcaaacataaatctaggaaggagggggaatccaagaggagtcatcgagat
cgggatcgtgaaaaggagagaaatggagagaggcatagggataaagataaagataagaga
gaccgtgatagtcggcgctatgagagagaaaagagttctgattctgacgagaggtatgat
atggagaagcatggagacagggatagtgataggaagcgcaaccgagatgatgaaagagag
agaacgagagacaaaaagagggataaagataaagagagggacaaagacaaagaaaaggag
aagagggataggactagagagaaggaaaaggaaagggaaaaagaaaggcaaagagaaaaa
gaaagagaaagggaaaaagaaagacaaagagaaaaggagaaagaaaaagaaaaagaacgt
gaaagagaaagagaaagagaaagagaaaaagaaaaagaacgagaaagagagagggagaga
agggaacgagaaagagagatagaagataagagggagagagagagggagagggaaaaagat
agagatcgggagaggagggtgcgggagagggagaggcgcagggacattgatgctgatgat
actgatgatgatggtagggagcgtgataggaagcgacctaggaaagataacaatgactac
aaggagagggagagggaaaggagtagcagcaggtcaaaaagacatagggatgatggagat
gggagccccagaaagaagtctgatgaaggtgattcatctgaggaagaacaaccaacccgt
gaggaggagctggaggatgaacaacggaaattggatgaggaaatggaaaagcggagaagg
agagttcaggagtggcaagagttaaaaagaaagaaggaagaaaccgagagagagaagaat
ggggaaggggatgctgatgaacctaagtcaggaaaggcctggactcttgaagaagaatct
gatgatgaagaagtaccttccttagagaaatcagagacaggtatagatgttgatgaagaa
gacaatcatactgacagaaaagttggagatgctatggcggtagtttctgaagatgaaaca
gccgcacccactttgcacaatggggccgatgatgctgctgatgatgaggaagttgatcct
ttagatgcttttatgaattctatggtattgcctgaagttgagaagctgaccaatgcagtg
gaaccgtcaattgttgatgaaaagaacaaggataagaaggatggtcgaaacaatggtgaa
caaccaaggagaggttcaaataaatcgatgggcagaataattcctggggaggattctgac
tcagattatggggacttggagaatgatgatgatcccgtagaagatgaaggtgatgatgag
ttcataaaaagggtgaaaaagacaaaagctgagaagctcgctgtagttgatcactcaaag
atagattatgatccatttcgtaaaaatttctatattgaagtgaaggagatgtcaagaatg
accccagaagaggtgggggtgtatcggaaacaattggaattgaagatccatggtaaagat
gtgcccaagcccatcaagacctggcaccaaactggacttacaagtaaaatcttggaaaca
ataaaaaagcttaactatgaaaagccaatgccaattcaggctcaggcagtgcctataatt
atgagtggtcgagactgcattggcattgcgaagactgggtcaggcaaaacccttgcattt
gtgctgccaatgctgaggcatatcaaggaccagccacctgtggtagctggagatgggcct
attgggcttataatggcaccaacgagggagcttgttcagcaaattcacagtgatattaaa
aagtttacaaaggtacttggtctcaggtgtgtgcctgtatacggaggttctggtgttgcc
caacagattagtgaattgaagcggggggccgaaattgtcgtctgtacccctggtaggatg
attgacatactgtgcacaagtggggggaaaataacaaatctgcgtagagttacttatttg
gttgtggatgaagctgatcgaatgtttgacatgggctttgaaccgcaaatcacccgaatt
gtacaaaatatccggcctgatcgtcaaactgttttgttttctgccaccttccctcgccag
gttgaagtcttggcacgcaaagtcttaaacagacctgtggaaatacaagttggtggaagg
agtgttgtgaataaggacataacacaattagttgaagtgaggatggaaaatgaaaggttc
ttgagattgttagagctgcttggggaatggtatgagaaaggaaaaattttgatatttgtt
gagtcacagaacaaatgcgatgctttgttcagggatctgcttaggcatggttatccttgt
ctctcacttcatgggggcaaagatcagacagatcgtgagtccaccataactgactttaag
agcaatgtttgtaatttgttggttgcaacaagcgttgctgccagagggttagatgtgaag
gagcttgaactggtaatcaattatgacagtccaaatcactatgaagactatgttcaccgg
gttggccgaacagggcgagctggccggaaaggttgtgctataacttttatctctggggaa
gatgctagatatgctccggatcttgtcaaagcattggaactctctgagcaagttgttcca
gatgacctgaagtctctcgctgataatttcacggcaaaagtaaatcagggacttgagcaa
gctcatgggactggttatgggggaagtggtttcaaatttaatgaagaggaagatgaagtg
aggagagcagcaaagaaagcacaagccaaggaatatggttttgaggaggacaagtcagat
tcagaagatgaagatgatggtattcgaaaggcagggggtgacatctcacagcaggctgcc
cttgctcagatagctgccattgctgctgcctccaaagctagtacggcttcaatgcagacc
cctgcctctgctgcccaactacttccaagcagtggactgcctgtttctcttccaggtgtc
cttggtctagcgttgccaggaacagcagcagttgctgctgggactagtctgcctctcgtg
ggcaatgatggggctgctcgggcagcagctattgcagctgcaatgaacttacagcataac
ttggcaaagattcaagctgatgcaatgcctgaacactatgaagcagaattggagataaat
gattttccccagaatgctcgatggaaggttacccacaaggaaactttgggccctatatca
gagtggactggggctgccattactaccaggggtcagtatttcccaccaggcaaggttaca
ggaccaggggatcgcaagctctacctgtttatcgagggccctactgaacaatctgtcaag
agagctaagacagaattaaaacgtgttttggaagacatctcaaatcaggcattatcgctt
cctggtggagctcagcaaggcagatatcaagttttataa
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