KEGG   Malus domestica (apple): 103439027
Entry
103439027         CDS       T03194                                 
Name
(RefSeq) uncharacterized protein
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103439027
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103439027
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103439027
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103439027
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind ARM_Cnot1 DUF3819 CNOT1_HEAT NOT1_connector
Other DBs
NCBI-GeneID: 103439027
NCBI-ProteinID: XP_008375800
LinkDB
Position
07:join(12868161..12868259,12869817..12870114,12870245..12870473,12870575..12870914,12871048..12871161,12871257..12871385,12871478..12871669,12871762..12871956,12872109..12872246,12872333..12872455,12872541..12872791,12873268..12873371,12874037..12874131,12874208..12874447,12874524..12874712,12874817..12874901,12874999..12875066,12875897..12876042,12876191..12876299,12876433..12876579,12876697..12876744,12876817..12876945,12877065..12877280,12877418..12877534,12877674..12877759,12877841..12877946,12879106..12879201,12879482..12879634,12880015..12880188,12880274..12880494,12880591..12880726,12880803..12880928,12881145..12881189,12881403..12881480,12881616..12881732,12882079..12882205,12882292..12882392,12882468..12882605,12882681..12882764,12883138..12883284,12883367..12883498,12883579..12883608,12883735..12883881,12883961..12884022,12884511..12884664,12884763..12884954,12885052..12885156,12885372..12885506,12885654..12885887,12886051..12886155,12886248..12886397)
AA seq 2393 aa
MLNFTPTTASQIRFLLQSLNDANSDSVLRELSQFTEHGLEGSILLLQTCLDHLTNYRTDL
KSAALERVLASIFKYLLDKPNFSTVFCECLRNIEINEGILENFSNALLLSVSEKISIALA
LSDSEDLDTRICGKNFCMDQIQKLCESPIAMNSSEQIQNIVIFLQRSEGRSKHVDSFMQM
LSLLQPKDDSFSVLTPLLSDELRDANFLSNVGLLHESGENDFDAILAEMAKEISMGDVMK
ELGYGCTVDSSQCKEILSLFLPLTEITISKILGMIASTHVGLEDNQNAFSTFRLAVGNST
LSDLPMLNTWNIDVLVDTIKQLAPGTNWIQVIENLDHEGFFIPNQEAFSFFMSVYQHVCQ
EPFPLHVICGSVWKNTEGQLSFLKHAVSAPPEVFTFAHSVRQLAYIDAVHGHKLELGHAN
HAWLSLDLLDVLCLLAERGHALAVRLMLEYPLKHCPEVLLLGMAHTNTAYNLLQYEVSFT
VFPMMVKNAMGIGMINHLWHINTSLVLRGFVDAHNCDPDSIARILDICQELKILSSVLEM
IPSSLSIRLAALASKKELIDLEKWLTNNLNTYKDTFFEECVKFLKEIQFGGSQDFNTRPF
QHSGAVSNIYVDTATIFTKVLKAHVGLVASSQLTEEMERLSVTIMDSIPRLPNGGTTESS
TDGYADDIEAEANSYFHQMFSGQLTIDSMVQMLARFKESSVKREQSIFECMIANLFEEYR
FFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQ
FVDRLIEWPQYCNHILQISHLRSTHSELVAFIEQALAKISSSHSDSDGSNHASAAHHHGP
SQATPGNVELNGSTILHTGQQHSSPLQLQQRHEGSLDDRHKPSNLSNDIKPPLSSAVQPP
VGPVGDAPRIQKSQSALSAPAMLSSPSPGFVRPTRGVTSTRFGSALNIETLVAAAEKRDT
LIEAPASEIQDKISFIINNISVANVEAKSKEFAEIMKEQYYPWFAQYMVMKRASIEPNFH
DLYLKFLDKVNSKGLNKEIVQATYENCKVLLGSELIKSSAEERSLLKNLGSWLGKLTIGR
NQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAE
IYSMPNLKMNLKFDIEVLFKNLGVDLKEITPSSLLKDRNREVEGNPDFSNKDIGAPQPQM
VAEVKLNQVELPVDVAPSNSASHTHISQYATPVHVSPGTLIEDEKVFPDQIPAQGLLPAT
PSQSPFSLPTPISNIATHVVINPKLSALGLHLHFQRVVPIAMDRAIKEIVTGIVQRSVSI
ATQTTKELVLKDYAMESDETRILLAAHLMVASLAGSLAHVTCKEPLRSSISTQLRNSLQG
LNIPNDHLEHAVQLVTNDNLDLGCAIIEQSATDKAVQTIDGEIAQQLSLRRKREGAGTTF
FDATMYTQGGSVPESLRPKPGHLSISQQRVYEDFVRLPWQNQSSQNSHVLPASTAATSAS
AGLNSTFGSASAQINPGFSAGPGSKFDAVSRPLDEAIESNPALHPSASSINVGAGDGVSQ
HSSENDSVIGSFPSAASALELQSVESSDTIQESGISSQPQPSPTVTERLASNISEPSLNT
RDALDKYQIVSQKLEALVTNDARELEIQGVIGEVPEIILRCVSRDEAALAVAQKVFKGLY
ENASNHTHVSAHIAMLTAIRDVCKLVVKELTSWVIYSDEERKFNKDITVGLIHSELLNLA
EYNVQMAKLIDGGRNKPATEFSISLLQSLVIEESKVISELHNLVDALAKLAAKPGSPESL
QQLVEMVKNPAYILGAPSAINVGKEDKARISKDKKASVHSPVSREDFGSVESVEPDPAGF
REQVSMLFAEWYRICELPGANDAACAHFILQLHQNGLLKGDDMTDRFFRVLTELSVAHCL
SSEMTIPSSLQTPQQVQNLSFLAIDIYAKLVFLILKGSSKLFLLSKILAVTVRFIQKDAE
EKKTSFNPRPYFRLFVNWLLDLGSLDPVIDGANFQILTAFANAFHALQPLKVPTFSFAWL
ELVSHRSFMPKMLVGNGQKGWPYIQRLLVHLFQFMEPFLRNAELGVPVHFMYKGTLRVLL
VLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEISQ
SPRILSEVDAALKAKQMKADVDEYLKTRQQGSSFLTELKQKLLLLPSEVASAGTRYNVPL
INSLVLYVGMQAIQQLQARTPHAQSTQTVPLTVYLVGAALDIFQTLIVDLDTEGRYLFLN
AIANQLRYPNTHTHYFSFIVLYLFAESNQHEIIQEQITRVLLERLIVNRPHPWGLLITFI
ELIKNPRYQFWNRAFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWVSESAH
NT seq 7182 nt   +upstreamnt  +downstreamnt
atgctcaattttacgccgaccaccgcgagccagattcgcttcctactccagagcctcaac
gatgccaactccgactccgttctccgagagctctctcagtttactgaacatggacttgag
ggaagcattttgctgctacagacctgtctggatcatctcactaattacagaacagactta
aagagcgcagcattggaacgagttcttgcctcaattttcaaatatctccttgacaaacct
aatttcagtacggtgttttgtgagtgcctaagaaatatagagattaatgaaggaattctt
gagaatttctctaatgcattactcctgtctgtatcggagaaaattagcattgctcttgcg
ctgtcagattccgaagacctagacaccaggatatgtggcaagaacttctgtatggatcag
atccagaaattgtgtgaaagtcctattgctatgaattcgtctgagcaaattcagaacatt
gttatattcctccagcggtctgagggccgttccaagcatgtggattcctttatgcagatg
ttatctttactgcagccgaaagatgacagtttttctgttttaactccattgctttcagat
gagctccgtgatgccaattttttgagcaatgtgggtttgttgcatgaaagcggagaaaat
gattttgatgctattttagctgaaatggcgaaagaaatcagcatgggagatgtaatgaag
gaattaggttatggatgcacagttgattcatctcagtgcaaagagattttatctcttttc
ttaccactcactgagattactatttcaaaaatacttggcatgattgcctctactcatgtt
ggtctcgaggacaatcagaatgcattttcaacattccggttggcggttggtaacagcact
ctatctgatctgcctatgttgaacacctggaatattgatgtccttgtagatacaatcaag
caacttgctcccggtactaactggatacaagttattgaaaatttggatcatgagggattc
ttcattcctaatcaggaggcattctcttttttcatgtctgtatatcagcatgtgtgtcag
gagccgttccccctccatgttatctgtgggtctgtttggaagaacaccgagggtcagcta
tccttccttaaacatgctgtgtcagcaccacctgaagtgtttacctttgcccactctgtt
aggcagctggcctatattgatgcagtgcatggccataagcttgaacttggacatgcaaat
catgcatggttgagtcttgaccttttggatgtactgtgtctactagctgagaggggtcat
gctcttgctgttcgattgatgcttgagtatcctcttaaacactgtcctgaagtcctgctt
cttgggatggcgcatacaaatactgcttataacctgctgcaatatgaagtgtcttttact
gttttccccatgatggtaaaaaatgccatgggcattggcatgattaaccacctttggcat
attaacacctcactggtgctgcggggatttgtggatgctcacaattgtgatccagatagc
atagctagaatattggatatctgtcaagagctaaagattctgtcatctgtcctggagatg
atcccttcctctttaagtatcagattagcagcccttgcttctaaaaaagagcttatagac
cttgagaagtggttgactaataatttgaatacgtataaggatactttctttgaggagtgc
gtaaagttcttgaaggagattcaatttggtggttcacaggattttaacaccagacctttc
caacattctggtgccgtgtctaatatttatgtggacactgctactatcttcacgaaggtt
cttaaagctcatgttggcttggttgcctctagccaacttactgaggagatggaaaggttg
tctgtaacaattatggattcgattccaaggctgccgaatggtggcactacagagtcttca
actgatggatatgcagatgatattgaagctgaagcaaactcttacttccatcaaatgttt
tctggtcaattgacaattgattcaatggtccaaatgcttgcccgattcaaggaatcttct
gtaaaaagggaacagtcaatttttgagtgtatgattgcaaatctgtttgaagagtataga
ttcttccccaagtatcctgaaagacagctcaaaattgctgcagttctgtttggctctgtc
atcaagcaccagctcgtaactcatctgactcttgggattgctctgcgtggagttttagat
gcattgcgcaaacctgcagattcaaaaatgtttgtgttcggaactaaggccttggagcag
tttgtggatcgtctgattgagtggccgcagtattgcaatcatattcttcaaatatcccat
ctgcggagtactcattcagagcttgtggctttcattgaacaggctcttgccaagatttct
tcaagccattcagactcggatggaagtaaccatgcttctgctgctcatcaccatggtccc
agtcaagctaccccaggaaatgtggagttaaatggttctaccatcttacataccgggcaa
caacattcttctccactccaacttcaacagagacatgaaggttctcttgatgaccgtcat
aaaccctcaaatttatcaaatgacataaagccacctttatcttctgctgtgcaacctccg
gttggtcctgtaggcgatgctcctcgcattcagaagtcacaaagtgcactcagtgctccg
gcaatgttgtcttctccttcccctggtttcgttcgtcctacacgaggagttacttctacc
aggtttggctctgctttgaatattgaaacattagttgctgctgctgagaaaagagatact
ctcattgaggctccagcatcagagattcaggacaagatatcatttataattaataatatt
tcagttgccaatgttgaagctaagtcaaaggagtttgctgaaataatgaaagagcagtac
tatccttggtttgcacagtatatggttatgaaaagggcaagcattgagccgaattttcat
gatttgtacctgaaatttctggacaaagttaattctaagggtttgaataaggagattgtt
caagccacttatgagaactgcaaggttcttcttggatctgagcttataaagtcaagcgca
gaagagcgttcgttgcttaaaaatttaggtagctggcttgggaagcttacaattggaagg
aatcaagtcttaagggctcgggaaatagatcccaaatctttgattatagaggcatatgag
aaagggttgatgattgcagttataccctttacttcaaagattctggagccatgccaaagt
agcttggcatatcagccaccaaatccttggacaatgggtattcttggactacttgctgag
atatattcaatgccaaacttgaaaatgaacctgaagtttgacatcgaggttctattcaag
aaccttggtgtggatttgaaggagataaccccaagttctctactcaaggaccggaacaga
gaagttgaagggaatcctgatttctctaacaaagatattggagcaccccaaccacagatg
gttgccgaagtgaaactaaatcaagttgaactaccagttgatgttgctccatctaattct
gcaagccatacacatatatctcagtatgcgacccctgttcatgtttcacctggaacctta
atcgaggatgaaaaggtgtttcctgatcagattcctgctcaaggactgttaccagctact
ccatcccagtcaccattctctcttcccacaccaatatctaatattgcaactcacgtggtt
atcaacccgaaactcagtgctttgggattgcacttgcattttcagagggtggttccaatt
gcaatggacagagctatcaaagagatagtaactggtattgttcagcgcagtgtttctata
gctacgcagacaactaaagagcttgtcttaaaggattatgccatggaatctgatgagaca
agaatattactggcagctcacttgatggttgcaagtttggcaggaagtctagctcatgta
acttgcaaggaacccttgcgtagttcaatatcaacccagctgcggaattcccttcaggga
ttaaatattccaaatgatcatctggaacatgctgtacaacttgttactaatgacaatctg
gatcttggctgtgcaatcattgaacagtctgctactgataaggcagtacaaacaattgat
ggagaaatagctcaacaactttcattaagaaggaagagggaaggtgcgggtacaacgttt
tttgatgctaccatgtatacacaaggaggcagtgtgcccgagtcccttcgcccaaaacct
ggtcatttgtccatttctcaacaacgagtttatgaggactttgtgcggcttccctggcaa
aaccagtctagccagaattcgcatgttcttcctgctagtactgcagctacatctgcaagt
gcaggtctaaatagcacgtttggttcagcctcggctcaaattaacccaggcttctcagca
ggccccggaagcaaatttgatgctgtttctcgtccactggatgaggcgattgaatccaat
ccagctctgcatccaagtgcatcctctattaatgttggagcgggtgatggtgtttcccag
catagttctgagaatgattctgtcattggttcatttccatctgctgcttctgccctagag
ctgcaatcagtagagtcatctgatactatacaggagtctggaatttcttcacagccgcaa
ccatcacctactgtaactgaacgtctggcaagcaacatatcagaaccttctctcaatacg
agggatgcattggataaataccagattgtttcacagaagcttgaagctttggtaaccaac
gatgctagagagttagaaattcagggagtaattggtgaagttcctgagattatactcagg
tgtgttagtcgagatgaggctgccttggctgtggctcaaaaggttttcaagggtttatac
gaaaatgcatcgaaccatactcatgtcagtgctcatattgcaatgctgacagctattcgc
gatgtttgcaagcttgttgttaaggagctcactagttgggttatttattcggatgaggag
cggaagtttaacaaagatattactgttggcctcattcacagtgaattgctaaatcttgca
gagtacaatgttcaaatggcaaaacttattgatgggggcagaaataagcctgcaactgag
ttttcaatttcccttctccaatctttggtgattgaagaatctaaagttatatcagaactt
cataatcttgttgacgcattggcaaagctcgctgcaaagcctggatctccggagtcgcta
cagcagctggttgaaatggtaaagaatcctgcttatattcttggtgcgccatctgctatt
aatgtaggaaaagaggacaaagccagaatatctaaagataaaaaggcttctgttcactct
ccagtgagcagggaagactttggtagtgtggagtctgtcgaaccagatcctgctggattc
cgtgagcaggtgtctatgctgtttgcagagtggtaccggatttgcgaacttcctggtgca
aacgatgcagcttgtgcccattttatcttgcagttgcatcaaaatggtctactgaagggg
gatgatatgacagaccggtttttccgtgtcctcacagagctatctgttgcacattgctta
tcttctgagatgacaattccaagctcactgcaaacacctcaacaagtgcagaatctctcc
ttccttgctattgatatttatgctaaacttgtcttcttaattttgaagggatcaagtaaa
ctatttctcttgtctaagattttggcagtcacagtgagattcattcaaaaggatgcagag
gagaagaaaacatctttcaatccaagaccgtattttagattgtttgttaactggcttcta
gaccttggttctttggatcctgtgattgatggtgctaactttcagatattgacagcattt
gcaaatgcatttcatgctttgcagccccttaaggttcctacgttcagctttgcatggctt
gagttggtgagtcataggagcttcatgccaaaaatgcttgttggaaatggtcagaagggt
tggccctatatccaacgtttgctggtacatttgtttcaatttatggagccatttttgagg
aatgctgaacttggagttccggttcatttcatgtataaaggcacacttagggtgcttcta
gtgctacttcatgatttcccggagttcctttgtgattatcattttactttctgtgatgta
atccctccaagctgcattcaaatgcgaaatatcatcctcagtgcatttccccgtaatatg
aggctaccagatccatctactcccaatttaaagatcgatttgcttgcagaaatcagtcag
tctccacgtattctttccgaggttgatgcagctctaaaagcgaagcagatgaaagctgat
gtggatgagtatctcaagacaaggcaacagggttcttcatttctgactgaactgaagcaa
aagttgctccttttaccaagcgaggttgcctcagctggtactcgttacaatgtacccctg
atcaactcccttgtgctttatgttgggatgcaggctatccagcagcttcaggctagaacg
cctcatgcgcaatctacccaaactgttccattgactgtctatttggtgggtgcggctttg
gatatttttcagactctgatagtggacctagatactgaagggcgctaccttttcctaaat
gcgatcgcgaaccaactgcgttatccaaacacccatacccattacttttctttcattgtt
ttgtacttgtttgctgaatcaaaccagcatgaaattatccaggagcaaatcacaagggta
ttgttggaacgtctgattgtcaaccggcctcatccatggggtcttctaattaccttcatt
gagcttatcaagaatccgagataccagttctggaaccgagctttcatcagatgtgcgcca
gagattgaaaaactctttgaatctgtctcaaggtcttgcgggggaccaaaaccagtggac
gaaagtatggtctcaggttgggtatcggagagtgcccactaa

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