KEGG   Malus domestica (apple): 103443790
Entry
103443790         CDS       T03194                                 
Name
(RefSeq) splicing factor SF3a60 homolog
  KO
K12827  splicing factor 3A subunit 3
Organism
mdm  Malus domestica (apple)
Pathway
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103443790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdm03041]
    103443790
Spliceosome [BR:mdm03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    103443790
 Complex B
    103443790
 Complex C
   U2 SnRNP specific factors
    103443790
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd MacP_activator Desulfoferrod_N
Other DBs
NCBI-GeneID: 103443790
NCBI-ProteinID: XP_008380911
LinkDB
Position
01:join(31108067..31108240,31108412..31108525,31108814..31108918,31109254..31109396,31109482..31109578,31110069..31110233,31110716..31110787,31111073..31111231,31111366..31111443,31111570..31111698,31111860..31112006,31112075..31112221)
AA seq 509 aa
MSSTLLEQTRAAHEEVERLERLIVKDFMNEPPSSKDRLYQGHRVRQLIDTITSTTEKLIE
IYEDKDNARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRKHPVARVVDANEEEEALL
KEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSAYLDTISQPQKIPRKLKSSRQ
YREYMENLLAYLIYFFQRTEPLQDLDRIFLKVETEFEEQWADGKVKGWENEKQENGHVQD
QLTMIDLDYYSTVEELMEVGPEKLKEALASLGLKTGGTVQQRAERLFLTKDTPLEKLDKK
HFAKGSHGAEQNGAAAAPQQVDNLKEIALLEAKTKKLCDLLSEAIERTRDNIMKKQALTY
EEIEAEREEEETQADTESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG
NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQARQGVNKWR
PDLEEEYEDREGNIYNKKTYTDLQRQGLI
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcgtcgacgctgctggagcagacacgtgcagctcacgaggaggtggagcggctggag
cggctgatagtgaaggacttcatgaacgagccgccgtccagcaaggaccgcttgtaccag
ggccaccgcgtccgccagctgatcgacaccatcacctccaccaccgaaaaacttattgag
atctatgaagataaagataatgcgaggaaggacgagattgcggctctcggaggccagact
gccactggcaccaacgttttcagcgcattttatgatagattgaaggagattcgtgagtat
caccgaaagcatccagttgctcgtgttgttgatgctaatgaggaagaagaagcactgctt
aaggaggagcctcaaatcgagttcagtggagaggaagcttttggacgataccttgacttg
catgaactatacaaccagtatattaattccaaatttggagaacctattgagtactctgct
taccttgatactatttcacaaccacaaaagattcctcgcaagctgaagtcgtcaaggcag
tacagggaatatatggaaaatctactcgcatatctgatatattttttccagaggacagag
cctttgcaagatcttgacaggatatttttgaaggttgaaactgaatttgaagagcaatgg
gcagatggtaaggtaaaaggatgggaaaatgagaagcaagaaaatgggcatgttcaagat
cagcttactatgattgatcttgattattatagcacggtggaagaacttatggaagtgggt
ccggaaaagctaaaggaggcactagcatcattaggactgaagacgggtggtactgttcag
cagcgtgcagagaggcttttccttacaaaggacacacctctggagaagttggacaagaaa
cattttgccaaaggttcgcatggtgctgaacaaaatggggctgctgcagctccacaacaa
gttgacaatttaaaagaaattgctttattggaggctaaaacgaaaaaattatgcgactta
ctgagtgaggctattgaaagaacaagagacaacatcatgaagaaacaggctttgacatat
gaagaaattgaagcagaacgtgaagaggaagagacgcaggccgatactgaaagtgatgat
gatgaacaacagatttacaatccactgaaattgccaatgggttgggatgggaagcccatt
ccgtactggctgtataagcttcatggtcttggtcaggaattcaagtgtgagatttgcggg
aattacagttactggggacgtagagctttcgagagacattttaaggaatggcgccatcag
catggtatgcgttgccttggcataccgaacaccaagaacttcaatgagatcacatcaatt
gaggaggctaaagaactctggaagaggatacaagcacgacaaggtgtgaacaagtggcgc
ccggatcttgaagaggagtacgaagacagagagggtaacatatacaataagaagacatac
accgatctgcagcgacagggactgatttaa

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