KEGG   Malus domestica (apple): 103450084
Entry
103450084         CDS       T03194                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103450084
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103450084
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103450084
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103450084
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind ARM_Cnot1 DUF3819 CNOT1_HEAT NOT1_connector
Other DBs
NCBI-GeneID: 103450084
NCBI-ProteinID: XP_028949083
LinkDB
Position
02:complement(join(23176722..23176871,23176965..23177069,23177226..23177459,23177789..23177923,23178696..23178800,23178893..23179084,23179169..23179322,23180715..23180776,23180946..23181092,23181185..23181214,23181288..23181419,23181502..23181648,23182039..23182122,23182195..23182332,23182410..23182510,23182597..23182723,23183061..23183177,23183353..23183430,23183637..23183681,23183906..23184031,23184110..23184245,23184344..23184564,23184651..23184824,23185209..23185361,23185654..23185749,23187770..23187875,23187957..23188042,23188162..23188278,23188379..23188615,23188714..23188842,23188915..23188962,23189079..23189225,23189374..23189482,23189610..23189755,23190636..23190703,23190796..23190880,23190987..23191175,23191252..23191491,23191565..23191659,23192301..23192404,23197824..23198071,23198160..23198282,23198369..23198506,23198649..23198843,23198936..23199127,23199222..23199350,23199447..23199560,23199689..23200028,23200131..23200359,23200488..23200785,23201871..23201969))
AA seq 2399 aa
MLKFTPATASQIRFLLQSLNDANSDSILRELSQFIEYGIEGSILLLQTCLDHLTNYRTEL
KNAALERVFASIFKSLLDRPNFSTVFCQSLRNTEISEGILENVSNALHLSVSEKTGIALA
LSDSENLDTRICGKNFCMAQIQKLCENANVMNSSEQIHNIVMFLHRSEGLSKHVDSFMQM
LSLLQLKDDSFSVLTPLLSDELRDANFLSNVDLLHENGENNFDAILSEMEKEISMGDIMK
ELGYGCTVDSSQCSEILSLFLPLTEITISKILGMIASTHVGLEDNQNTFSTFWLALGNST
LSDLPMLNTWNIDVLVDTIMQLAPGTNWIQVIENLDHEGFYIPNQEAFSFFMSVYQHVCQ
DPFPLHVICRSVWKNTEGQLSFLKHAISAPPEVFTFAHSVRQLAYIDAVHGHKLQLGHAN
HAWLSLDLLDVLCLLAERGHALPVRSMLEHPLKHCPEVLLLGMAHTNTLYNLLQYEVSYT
VFPMMVKNATGSGIINHLWHINTSLVLRGFMDSHNCDPDSIARILDICQELKILSSVLEM
IPSSFSIRLAALASRKELVDLEKWLSNNLNAHKDIFFEECIKFLKEIQFSGSQDFSTRPF
QHSGAVSNIFVDTATIFLKVLKAHVGLIASSQLTEELERLSVTIMDSNPRLQNCDPTEST
DGYADDIEAEANSYFHQMFSGQLTIDSMVQMLARFKESSIKREQSIFECMIANLFEEYRF
FPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQF
VDRLIEWPQYCNHILQISHLQSTHSELVAFIEQALARISLGHLDSDGSNHASAAHHHGPS
QATPGNVELNGSTILHTGQQLSSPLQLQQRHESSLDDHHKASNSSNDIKPPLSSAVQPPV
GPVDDPPSIQKSQSALGAPAMLSSASPGFVRPSRGVTSTRFGSALNIETLVAAAEKRDTP
IEAPASEIQDKISFIINNISVANVEAKSKEFAEIMKEQYHPWFAQYMVMKRASIEPNFHD
LYLKFLDKVNSKCLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEI
YSMPNLKMNLKFDIEVLFKNLGVDLKEISPSSLLKDRNRELEGNPDFSNKDIGSSQPQMV
ADVKSGMLSPLNQVELPVEVAPSNSGSHTHLLSQYAPPVHISTGTLIEDEKLLPDQIPAQ
GLLQATPSQSPFSVPTPISNIATHVVINPKLSALGLHLHFQRVVPIAMDRAIKEIVSGIV
QRSVSIATQTTKELVLKDYAMESDETRILYAAHLMVASLAGSLAHVTCKEPLRTSISTQL
RNSLQGSNIPNDHLEHAVQLVTNDNLDLGCAIIEQAATDKALQTIDGEIAQQLSLRRKRE
GAGTTFFDANMYTQSGSVPESLRPKPGHLSISQQRVYEDFVRLPWQNQSSQNSHVLPAST
AAPSASAGLNSIFGSASVQLNTGYSAGPGSKFDVVSRPLDEAVEPNPALHSSASSICVGA
GDGVSQHSSENDSVIGSFLSAASAPELQSVESSDAIKESGISSQPLPSSTATELLACNIS
EPSLNTRDALDKYQIVSQKLEALVTNDAKESEIQGVIGEVPEIILRCVSRDEAALAVAQK
VFKGLYENASNHTHVSAHIAMLTAIRDVCKLVVKELTSWVIYSDEERKFNKDITVGLIHS
ELLNLAEYNVQMEKLIDGGRNKPATEFSISLLQSLVIEESKVISELQNLVDTLAKLAAKP
GFPESLQQLVEMVKYPASTVGAPSAINVGKEDKGRISKDKKASVHSPVSREDFSNVESVE
PDPPGFREQVSMLFAEWYRICELPGANDAAYTHFILQLHQNGLLKGDDMTDRFFRVLTEL
SVAHCLSSEMTIPGTLQTPQQVPNFSFLAIDIYAKLVFLILKGSNKLFLLSKILAVIVRF
IQKDAEEKKGSFNPRPYFRLIVNWLLDLGSLDPVIDGANFQILTAFANAFHALQPLKVPT
FSFAWLELVSHRSFMPKMLAGNGQKGWPYIQRLLVHLFQFMEPFLRNAELGVPVHFLYKG
TLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDL
LAEISQSPRILSEVDAALKAKQMKADVDEYLKTRQQGSSFLTELKQKLLLLPSEAASAGT
RYNVPLINSLVLYVGMQAIQQLQARTPRAQSTQTVPLAVYLVGAALDIFQTLMVDLDTEG
RYLFLNAIANQLRYPNTHTHYFSFIVLYLFADSNQHEIIQEQITRVLLERLIVNRPHPWG
LLITFIELIKNPRYQFWNRAFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWVSESAH
NT seq 7200 nt   +upstreamnt  +downstreamnt
atgctgaagtttacgccggccaccgccagccagattcgcttcctcctccagagcctcaac
gacgccaactccgactccattcttcgagagctctctcagtttattgaatatggaattgag
ggaagcattttgctgttacagacctgtctggatcatctcactaattacagaacagagtta
aagaatgcagcattggagcgggtttttgcctcaattttcaaatctctccttgatagacct
aatttcagtacggtgttttgtcagtccctaagaaatacagagattagcgaaggaattctt
gagaatgtctctaatgcattacacctgtctgtatctgagaaaactggcattgctcttgcg
ttgtcagattctgaaaacctagacaccaggatatgtggcaagaacttctgtatggctcag
atccagaagttgtgtgaaaatgctaatgttatgaattcatctgagcaaattcataacatt
gttatgttcctccaccggtctgagggcctttccaagcatgtggattcctttatgcagatg
ttatctttactgcagctgaaagatgacagtttttctgttttaactccattgctttcagat
gagctccgtgatgccaattttttgagcaatgtggatttgttgcatgaaaacggagaaaat
aattttgatgctattttatctgaaatggagaaggaaatcagcatgggagatataatgaag
gaattaggttatggatgcacagttgattcatctcagtgcagcgagattttatctcttttc
ttacctctcactgagattactatttcaaaaatccttggtatgattgcctctactcatgtt
ggtcttgaggacaatcagaatacattttcaacgttctggttggcgcttggtaacagcact
ttatccgatctgcctatgttgaacacctggaatattgatgtccttgtagatacaatcatg
caacttgctcccggcactaactggatacaagttattgaaaatttggatcatgagggattc
tacattcctaatcaggaggctttctcttttttcatgtccgtgtatcagcatgtgtgtcag
gatccattccccctccatgttatctgcaggtctgtttggaagaataccgagggtcagtta
tccttccttaaacatgctatatcagcaccacctgaagtgtttacctttgcccactctgtt
aggcaactggcctatattgatgcagtgcatggccataagcttcaacttggacatgcaaat
catgcatggttgagtcttgaccttttggatgtactgtgtctactagctgagaggggtcat
gctcttcctgttcgatcaatgcttgagcatcctcttaaacactgtcctgaagtcctgctt
cttgggatggcccatacaaatactctgtataacctgctgcaatatgaagtgtcttatacc
gttttccccatgatggtaaaaaatgcaacgggcagtggcataattaaccacctctggcat
attaacacctcactggtgctgcggggatttatggattctcacaattgtgatccagatagc
atagctagaatattggatatctgtcaagagctaaagattctatcatctgtcctagagatg
atcccttcctcttttagtatcagactggcagcccttgcttccagaaaagagcttgtagac
cttgagaagtggttgagtaataatttgaatgcgcataaggatattttctttgaggagtgc
ataaagttcttgaaggagattcaattcagtgggtcacaggatttctccaccagacctttc
caacattctggtgccgtgtctaatatttttgtggacactgctactatattcttgaaggtt
cttaaagctcatgttggcttgattgcctctagccaacttactgaggagttggaaaggttg
tctgtaacaattatggattctaatccaaggctgcagaattgtgaccctacggagtcaact
gatggatatgcagatgatattgaagctgaagcaaactcttacttccatcaaatgttttct
ggtcagttgacaattgattcaatggtccaaatgcttgcccgattcaaggaatcttctata
aaaagggaacagtcaatttttgagtgcatgattgcaaatctgtttgaagaatatagattt
ttccccaagtatcctgaaagacagctcaaaattgccgcagttctgtttggctctgtcatc
aaacaccagcttgtaactcatctgactcttgggatcgctctgcgtggtgttttagatgca
ttgcgcaaacctgcggattcaaaaatgtttgtgtttggaactaaggccttggagcagttt
gtggatcgtctgattgagtggcctcagtattgcaatcatattcttcaaatatcccatctg
cagagtactcattcagagcttgtggctttcattgaacaggctcttgccaggatttcatta
ggccatttagattcagatggaagtaaccatgcttccgctgctcatcaccatggtcccagt
caagctaccccaggaaatgtagagttaaatggctctaccatcttacataccgggcaacaa
ctttcttcaccactccagcttcaacagagacatgaaagttctcttgatgaccatcataaa
gcctcaaattcatcaaatgacataaagccacctttatcttctgcagtgcaacctccggtt
ggtcctgttgacgatcctcctagtattcagaagtcacaaagtgcactcggtgctccagca
atgttgtcttctgcttcccctggttttgttcgtccttctcgaggagttacttctaccagg
tttggctctgctttgaatattgaaacattagttgctgctgccgagaaaagagatactccc
attgaggctccagcatcagagattcaggacaagatatcatttataattaataatatttca
gttgccaatgttgaagctaagtcaaaggagtttgctgaaataatgaaagagcagtaccat
ccttggtttgcgcagtatatggttatgaaaagggcaagcattgagccgaattttcatgat
ttgtacctgaaatttctggacaaagttaattctaagtgtttgaataaggagattgttcaa
gccacttacgagaactgcaaggttcttcttggatctgagcttataaaatcaagctcagaa
gagcgttcattgttaaaaaatttaggcagctggcttgggaaacttacaattggaaggaat
caagtcttaagggctcgggaaatagatcccaaatctttgattatagaggcatatgaaaag
gggttgatgattgcagttataccctttacttcaaagattctggagccatgccaaagtagc
ttggcatatcagccaccaaatccttggacaatgggtattcttggattacttgctgagata
tattcaatgccaaacttgaaaatgaacctgaagtttgatattgaggttctattcaagaat
cttggtgtggatttgaaggagatatccccaagttctcttctcaaggaccggaacagagaa
cttgaagggaatcctgatttctctaacaaagatattggatcatcccaaccacagatggtt
gctgatgtgaaatccggaatgttatctccgctaaatcaggttgaactacccgttgaggtt
gctccatctaattctggaagccatacacatctactatctcagtatgcgccccctgttcat
atttcaactggcaccttaattgaggatgaaaagctgttgcctgatcagattcctgctcaa
ggactgttacaagctactccatcccagtcaccattctctgttcccacaccaatatctaat
attgcaactcacgtggttatcaacccgaaactcagtgctttgggattgcacttgcatttt
cagagggtggttccgattgcaatggacagagctatcaaagagatagtatctggtatcgtt
cagcgcagtgtttctatagctactcagacaactaaagaacttgtcttaaaggattatgcc
atggaatctgatgagacaagaatattatatgcagctcacttgatggttgcaagtttggca
ggaagtctagctcatgtaacttgcaaggaacccttgcgtacttctatatcaactcagctg
cgaaattcccttcagggatcaaacattccaaatgatcatctggaacatgctgtacaactt
gttactaatgacaatctggatcttggctgtgcaatcattgaacaggctgctactgataag
gcattacaaacaattgatggagaaatagctcaacaactgtcattaagaaggaagagggaa
ggtgcgggtacaacattttttgatgctaacatgtatacacaaagtggcagtgtgcctgag
tcccttcgccctaaacctggtcatttgtccatttctcaacaacgagtttatgaggacttc
gtgcggcttccctggcaaaaccagtctagccagaattcacatgttcttcctgctagtact
gcagctccatctgcaagtgctggtctaaatagcatatttggttcagcctcggttcaactt
aacacaggctactcagcaggtcctggaagcaagtttgatgttgtttctcgtccactggat
gaggcagttgaacccaatccagctctgcattcaagtgcatcatctatttgtgttggagcg
ggtgatggtgtttcccagcatagttctgagaatgattctgtcattggttcatttctttct
gctgcttctgccccagagctgcagtcagtagagtcgtctgatgctataaaggaatctgga
atttcttcacagccgctaccttcatctactgcaactgaacttctggcatgcaacatctca
gaaccttctcttaatacgagggatgcattggataaataccagattgtttcacaaaagctt
gaagctttggtgaccaacgatgctaaagagtcagaaattcagggagtaattggtgaagtt
cctgagattatactcagatgtgttagtcgagatgaggctgccttggctgtggctcaaaag
gttttcaagggtttatacgagaatgcatcgaaccatactcacgtcagtgctcatattgca
atgctgacagctattcgtgatgtttgcaaacttgttgttaaggagctcactagttgggtt
atttattctgatgaagagcggaagtttaacaaagatattactgttggccttattcacagt
gaattactaaatcttgcagagtacaatgttcaaatggaaaaactcattgatgggggcaga
aataagcctgcaactgaattttcaatttcccttctccaatctttggtgattgaagaatct
aaagttatatcagaacttcaaaatcttgttgacacattggcaaagctcgctgcaaagcct
ggatttcctgagtcgctacagcagctggttgaaatggtaaagtatcctgcttctactgtg
ggtgctccgtctgctattaatgtaggaaaagaggacaagggaagaatatctaaggataaa
aaggcttctgttcactctccggtgagcagggaagactttagtaatgtggagtctgtcgaa
ccagatcctcctggattccgtgagcaggtgtcaatgctgtttgcagagtggtaccggatt
tgtgaacttcctggtgcaaatgatgcagcttatacccattttatcttgcagctacatcaa
aatggtctgctgaaaggggatgatatgacagaccggtttttccgtgtcctcacagagcta
tctgttgcacattgcctgtcttctgagatgacaattcccgggacactgcaaacacctcaa
caagtgccgaatttctccttccttgctattgatatctatgctaaacttgttttcttaatt
ttgaagggatcaaataaactatttctcttgtccaagattttagcagtcatagtgagattc
attcaaaaggatgcagaggagaaaaaaggatctttcaacccaagaccgtattttagattg
attgttaactggcttctagaccttggttctttggatcctgtgattgatggtgctaacttt
cagatattgacagcatttgcaaatgcatttcatgctttgcagccccttaaggttcctaca
ttcagctttgcatggcttgagttggtgagtcataggagtttcatgccaaaaatgcttgct
ggaaatggccagaagggttggccctatatccaacgtttgctggtacatttgtttcaattc
atggagccatttttgaggaatgctgaacttggagtcccggtgcatttcctgtataaaggc
acacttagggtgctgctagtgctactccatgactttccagagttcctttgtgattatcat
tttacgttctgtgatgtaattcctccaagctgcattcaaatgcgaaatatcatcctcagt
gcatttccccgtaatatgaggctaccagatccatctactcccaacttaaagattgatttg
ctcgctgaaatcagtcagtctccacgtattctctctgaggttgatgcagctctaaaagcg
aagcagatgaaagctgatgtggatgagtacctcaagacaaggcaacagggttcttcattt
ctgactgaactgaagcaaaagttgctccttttaccaagtgaagctgcctcagctggtacc
cgttacaatgtacccctgatcaactcccttgtgctttatgttgggatgcaggctatccag
cagcttcaggctagaacgcctcgagcgcaatctacccaaactgttccattggctgtctat
ttggtgggtgctgctttggatatttttcagactttgatggtggacctagatactgaaggg
cgctaccttttcctaaatgcgattgcaaaccaactgcgttatccaaacacccatacccat
tacttttccttcattgttctgtacttgtttgccgattcaaaccagcatgaaattatccag
gagcaaatcacaagggtattgttggaacgtctgattgttaaccgacctcatccatggggt
cttctgattaccttcattgagcttatcaagaatccgagataccagttctggaaccgagca
ttcatcagatgtgcaccggagattgaaaaacttttcgaatctgtctcaaggtcttgtggc
ggtccaaaacctgtggacgaaagtatggtctcaggttgggtatcggagagtgcccactaa

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