Malus domestica (apple): 103451862
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Entry
103451862 CDS
T03194
Name
(RefSeq) probable pectate lyase 3
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm00040
Pentose and glucuronate interconversions
mdm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103451862
Enzymes [BR:
mdm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103451862
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103451862
NCBI-ProteinID:
XP_008389523
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Position
13:complement(join(5187940..5188161,5188389..5188631,5188721..5189381,5189586..5189818))
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AA seq
452 aa
AA seq
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MAAMFNSSYFFLCLFFLSFAVFVSSNDGPTDVANEDSTVLDLDAYWKERAQEALKEAMES
YHKNPEQVTEEFNTGVAELLSKENTTRRNLRGNKGYNGPCMATNPIDACWRCDPNWADNR
KKIVGCAQGFGKKATGGKDGPIYVVTVGTDDDVQNPKPGTLRHAVIQKGPLWIIFARSMV
IRLQQELMVTSDKTIDGRGANVVIEEGGGITLQFVKNVILTNLHIKMIVSKPGGMIRDSV
DHMGLRTKSDGDGISLFGASNVWIDHMSMSRCADGLIDAVMASTAITISNSHFTDHDDVM
LFGANNAHTQDKIMQITLAFNHFGRGLVQRMPRVRHGFFHLVNNDYNHWIMYAIGGNMNP
TIISQGNRFIAPVNEATKQVTHREHTPESEWKNWEWRSEGDLMMNGAFFVESGSRASQNP
AKLDMMPFQPGTFATKLTKFSGALSCVVGKPC
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaatgtttaactcgtcctatttctttctatgtttgtttttcttatcctttgct
gtatttgtttcgagtaatgatggtccaaccgatgttgcaaatgaagatagtacggtatta
gatttagatgcgtactggaaagaacgagcccaagaagccttaaaggaggccatggaaagc
taccataaaaatcctgagcaagtcactgaggagttcaatactggagttgccgagcttttg
tccaaggaaaacaccacaagaaggaacttgaggggtaacaagggttataatggtccatgc
atggcgaccaatccaattgacgcctgctggaggtgtgaccctaattgggccgataaccga
aagaagattgtaggctgcgcccaaggctttggtaaaaaggccactggaggtaaggacggt
cccatttacgtggtgactgtgggaacagatgatgacgtacaaaaccccaaacccggaacc
ctacgccacgccgtgattcagaaagggcctttgtggataatcttcgcaagaagcatggtg
attaggctgcagcaagagctgatggtgaccagtgacaagaccattgatggtagaggagcc
aatgttgtgatagaagagggtggtggcattaccctccagtttgtgaagaatgtaatcctc
accaaccttcacatcaaaatgattgtgtccaaacccggtggtatgatcagggactccgtc
gaccatatgggtttgaggaccaagagtgacggcgatggtatctccctctttggtgcctcc
aacgtctggatcgaccacatgtccatgtcccggtgcgcagatgggctcatcgatgccgtc
atggcttccaccgccatcaccatctccaactcccacttcactgaccacgatgatgtgatg
ttgtttggcgccaacaacgcgcacactcaagacaaaatcatgcaaattactttggccttc
aaccactttggtcggggactggtgcagaggatgccgagggtccggcacggattcttccac
ctggtgaacaacgactacaaccactggatcatgtatgccatcggaggaaacatgaaccct
acaatcatcagccagggtaacaggttcattgctcccgtgaacgaggccaccaaacaggtg
acccatagggagcatacaccagagtcagagtggaagaactgggagtggagatctgaggga
gatttgatgatgaatggagctttctttgttgaatctggatcaagagccagccaaaaccca
gcaaagttggacatgatgcccttccaaccagggacctttgccacaaagctcacaaaattt
tccggcgctctaagctgcgttgtcggcaaaccctgctaa
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