KEGG   Malus domestica (apple): 114825579
Entry
114825579         CDS       T03194                                 
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
  KO
K12600  superkiller protein 3
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    114825579
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    114825579
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     114825579
SSDB
Motif
Pfam: TPR_1 TPR_11 TPR_2 TPR_17 TPR_14 TPR_16 TPR_8 TPR_12 TPR_9 TPR_20 TPR_15 BTAD TPR_7 Tcf25 TPR_10
Other DBs
NCBI-GeneID: 114825579
NCBI-ProteinID: XP_028960147
LinkDB
Position
06:complement(join(130038..130216,130952..131155,131499..132142,132505..132744,133063..133157,133256..133629,133890..133941,134214..134426,134570..134635,134923..134980,135087..135202,135577..135748,135826..136073,136272..136352,136428..136568,136977..137069,137380..137430,137537..137956,138129..138212,138297..138308))
AA seq 1180 aa
MQHTDPEKEGKLRRLQESVEAHPDDPSLRFQLGVLLWKEWDDKEKAAEQFLVAAKLKPEI
EKGGAFTYLGLYYAGLDSESHTQRALKCFQKAISLNPDDSLSGEALCDLLDQQGKESLEV
AVCREASQNSPRAFWAFQRLGYLQLHQNKCSEAVHSLQHAIRGYPTSAHLWEALGLAYQR
LGRFTAALKSYGRAIELEGTRIFALLESGNTFLMLGSYKKGVETFQQALEISPKSVSAHY
GLAAGMLGLAKECNNLGAYRWGATVLEEASKVAWMSTQLAGNMSSIWKLHGDIQLTYAKC
YPWMEEGNGLEFDMESFDNSILSWKRTCCLAAKTARCSYQRALHLAPWQANMYTDIAVTS
DLIDSLDNSSGHDLSAWQQSEKMALGALLLEGDNSEFWVALGCLSDHKALKQHALIRGLQ
LNVSLAIAWAYLGKLYRKQGEKQFARQSFDCARSIDPSLALPWAGMSADFHAGESAVGEA
YESCLRAAQILPLAEFQLGLAKLALASGNLSSSQVFGAIRQAMQRAPHYPECHNLNGLVS
EAQCNYQSAAVSYRLARCAITNLSGSDRKSHMTDISVNLARSLSKAGNALDALHECEDLK
NEGLLDAEGLQIYAFSLWQLGETNLALSVVRSLAVSVCTMEQKSAAATVVFICRLLYYIS
GLDSAINSILKMPKQLFRSSKISFILSAIHALDQNNRLQSIVSSTRDYLKSHEEITGMHF
LIALGKLVKHGSECRLGYQSGVNHLRKALHMYPNSSLLRNFLGYLLLSTEEWNDTHIATR
CCNVDTTNPIEAGLKSAYEILGAGAVACYAVGTCNPKFSYPTCTYQCLNEPGTIQQLQKC
LRREPWNQNIRYLLVLNLLQKAREERFPCHLCIILERLITVALSDELYHNDDSSYEYKKF
QFQLCASEICLQGGNLTGCINHAKNASSIMLPDGYLFFAHLLLLRAYASESNIVNLQKEY
IRCLQLKTDLHIGWICLKLMESRSEVQTDLDMLELSFRECPTELMNSRNLWGAIFSLVKG
LICIWNQDIVSAEEFLAQACSLAGAECSLLLCHGATCMELSRRGCASQFLSLAIRSLVKA
QEASLIPLPIVSALLAQAVASLGSKEKWEKNLRLEWPTWPPEMRPAELFFQMHLLAKQSK
ASPQSSSVEFCQSPQRWVLRAIHTNPSCMRYWKVLQKFVE
NT seq 3543 nt   +upstreamnt  +downstreamnt
atgcaacacacggacccagaaaaggaagggaagctccgacggttgcaggagagcgtagag
gcccatccagatgacccctcccttcgcttccaactgggagtgttgttgtggaaagagtgg
gatgacaaggaaaaagcggcagagcagttcctagtcgccgcgaaattgaagcctgagatt
gaaaagggaggggcattcacatatctagggctttattacgcgggtcttgactccgagtcc
cacacccagagagctctcaagtgtttccaaaaagctatctctctcaatcctgatgactcc
ctttctggggaagccttgtgtgatttgttggaccaacaaggaaaggaaagcttggaggtg
gctgtgtgccgggaggcttcccaaaactcacccagggccttttgggcttttcagagactg
ggttacttgcagctccatcaaaacaaatgctctgaagctgtccacagtcttcaacatgcc
attcgtggctatcctacctccgcacatctctgggaggcacttggccttgcctaccagcga
ctaggcaggttcactgctgctctaaagtcctatggaagagccatcgaattggagggtaca
agaatatttgcattgcttgaaagcggaaacacctttttgatgcttggttcctataaaaag
ggagttgagacatttcagcaagctttagagatctcccccaaaagtgtctctgcacactat
gggcttgctgctgggatgcttggtttggccaaggaatgtaataatttgggagcatataga
tggggagctacagtgctagaggaggcatctaaagttgcctggatgagcactcaattagct
ggaaatatgtcatctatttggaaactgcatggtgacatacagcttacttatgcaaagtgt
tatccatggatggaggagggaaacggtttagaatttgatatggaatcttttgataattcc
atcctttcatggaaacgtacctgctgtttggctgcgaaaactgccaggtgctcttatcaa
cgagctttgcacttggccccatggcaagctaatatgtatactgacattgcagtaacttca
gatctcatagactctttagacaacagttctggacatgacttaagtgcttggcagcaatca
gagaagatggctttgggagccttgttacttgagggtgacaattctgagttttgggtagcc
ttgggatgtttatctgatcataaagcactgaaacaacatgctctaatcaggggattgcaa
ttgaatgtatctttagctattgcttgggcatacctagggaagctttatagaaaacaaggt
gagaaacaatttgctagacaatcatttgattgtgccagaagtatagatccttcacttgct
ttaccatgggcaggcatgtcagctgattttcatgctggagagtctgcagttggagaagct
tacgagagctgcttacgagctgcgcagatattgcctcttgccgaattccaacttggtctt
gcaaagcttgctcttgcttcagggaatctctcatcttcacaggtctttggagccatcagg
caggccatgcagcgtgcacctcactatcctgaatgccataatttgaacgggctagtttct
gaggcacaatgcaattatcagtctgctgccgtttcttatagactagcacgctgtgcaatc
accaatttgtcaggcagtgacagaaagtctcatatgacggatatatctgtcaatttggcc
cgatcccttagtaaggcagggaatgctctagatgctttgcacgaatgtgaagatttgaag
aacgaagggttgctcgatgcggaaggtttgcaaatatatgctttctccttgtggcaactt
ggtgagactaacctggctctttctgtggtaagaagtctggctgtgagcgtttgtacaatg
gaacaaaaatctgcagctgccactgttgtttttatctgtagactcctttattatatttct
ggactggattcagccatcaatagcattctgaagatgccaaagcaactatttcggagttca
aagatcagtttcatattatctgctattcatgctctagatcaaaataatcgtcttcagtct
attgtgtcaagcacccgtgactatcttaagtctcatgaagagataactggaatgcacttt
ttgatagcacttggtaaactagtaaaacatggatcagaatgccgtcttggatatcaaagc
ggagttaatcaccttaggaaagctcttcatatgtatcctaacagtagcttattaaggaat
tttcttggttatcttttgttgtccactgaagaatggaatgatacccacattgcaactagg
tgttgcaacgtcgatactaccaatccaattgaagctggtttaaaatcagcatatgaaatt
cttggtgctggagcagtcgcttgctatgctgttggcacttgcaatccgaagttctcttac
ccaacatgcacataccagtgcctgaatgaacctggaaccatccagcaactacagaaatgt
ttacgccgagaaccatggaaccagaacataaggtatttgcttgttctcaatttactgcag
aaggcacgtgaagagagatttccttgccatctttgtattatacttgagcggctaataact
gtagctctttctgatgaactttatcataatgatgactcatcttatgaatataagaaattc
cagtttcaactttgtgcttctgagatctgtttgcaaggtggtaatctgactggctgtatc
aaccatgccaaaaatgcttcatcgatcatgctccctgatggctatcttttctttgcacac
ttgctactactccgtgcctatgcctcagaaagtaatatagtaaaccttcaaaaagagtat
ataagatgcttgcagctcaagacagatcttcatattggttggatatgtctaaaactcatg
gagtctcgttctgaagtgcaaactgacttggatatgttagaactgagcttcagagaatgc
ccaacagagttaatgaattcacggaatctgtggggggctatattcagtctggtgaaaggc
ttgatttgtatatggaaccaggacattgtttctgcagaagagtttcttgcacaagcttgt
tcattggcgggcgctgagtgcagcctcctgctttgtcatggtgccacctgtatggagctt
tcccgccgggggtgtgcttcacagttcttatcacttgcgataaggagtcttgttaaagct
caagaagcttctctcattcccctaccaattgtctcagcattattagcgcaagcagtagcg
agtcttggctcaaaagagaagtgggagaagaacctccgtcttgaatggcccacttggccg
ccagaaatgaggcctgctgagctgttcttccagatgcatttgcttgcaaaacagtcaaaa
gctagtccacaatcttccagtgtggagttttgtcagagtccgcaaagatgggttcttcga
gcaattcatacaaacccttcttgtatgagatattggaaggttttgcagaagtttgtggaa
tga

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