Mesorhizobium sp. AaZ16: ACG873_08780
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Entry
ACG873_08780 CDS
T10854
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
meaa Mesorhizobium sp. AaZ16
Pathway
meaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACG873_08780 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meaa03021
]
ACG873_08780 (rpoB)
03400 DNA repair and recombination proteins [BR:
meaa03400
]
ACG873_08780 (rpoB)
Enzymes [BR:
meaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACG873_08780 (rpoB)
Transcription machinery [BR:
meaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACG873_08780 (rpoB)
DNA repair and recombination proteins [BR:
meaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACG873_08780 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
XIK07291
LinkDB
All DBs
Position
1382580..1386716
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTQTFNGRRRVRKFFGNIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLQAVFK
SVFPISDFSGSSMLEFVKYEFEGPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQDVYMGDMPLMTLNGTFIINGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDSKDVVHARIDRRRKIPVTSLLMALGMDAEEILSTFYNKIEYRR
SGDHWRIPFSVDRFRGLKAVGDLVDADTGEIVVEQGKKITARQAKQLADKGLKAIKATED
DLYGSYLAEDIVNFQTGEIYLEAGDEIDEKTLKVLLSTGAEEFQVLDIDHINVGGYIRNT
LAVDKNESRQDALFDIYRVMRPGEPPTIDTAEAMFNSLFFDADRYDLSAVGRVKMNMRLD
LKAEDTVRVLRKEDILAVVRTLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIETP
YRKIVDGKVTLDVSYLSAMEESKHYVAQANAQLDKDGRFVDEFVICRHAGEVMMAPRENV
DLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVAR
DSGAAIGARRGGIVDQVDATRIVIRATEDLDPGKSGVDIYRLMKFQRSNQNTCINQRPLV
RMGDKVNKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDLILLSEKIVSDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVLPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYSRLSDMLVGKEAIAGPKGFKKGTKLSREMLGEYPRSQWW
QFAIEDEKLQSELEALRGQYDDSKKALEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KMQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLG
WACAGMGRKIGEMIEAYKADGNIKPLRAEIEDLIPENDRNEPVRQFDDESIVRLGEQMRR
GVSIATPVFDGAHEVHINEMLERAGLHTSGQSQLYDGRTGEPFDRKVTMGYIYMLKLHHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDSFEAGIPESFNVLVKEMRSLGLNVELENTRIDELPARLPDAAE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggcccagacccagactttcaatggccgcagacgcgtacgcaaattcttcggaaacatc
ccggaagttgcggagatgccgaaccttatcgaggttcagaaggcatcctatgaccagttc
ctgatggtggacgagcccaagggcggccgtccggacgagggactgcaggccgttttcaag
tcggtcttcccgatttccgatttttccggctcgtcgatgctggaattcgtgaagtacgaa
ttcgagggaccgaaattcgacgttgacgaatgccgtcagcgcgacctgacttatgccgcg
ccgctgaaggtgacgctgcgccttatcgtgttcgatatcgacgaggataccggcgcgaag
tccatcaaggacatcaaggagcaggacgtctacatgggtgacatgccgctcatgaccttg
aacggcaccttcatcatcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgctcg
ccgggcgtcttcttcgaccacgacaagggcaagtcgcactcgtcgggcaagcttctgttt
gccgcgcgcgtcatcccttatcgcggctcgtggctcgatatcgagttcgattccaaggac
gtcgtgcacgcccgcatcgaccgccgccgcaagattccggtgacgtcgctcttgatggcg
ctcggcatggatgccgaggagatcctttcgaccttttacaacaagatcgagtaccggcgt
tcgggcgaccattggcgcattccgttctccgttgaccgtttccgcggcctgaaggccgtt
ggcgaccttgttgacgcagataccggcgaaatcgttgtcgagcagggcaagaagatcacc
gcccgccaagccaagcagcttgccgacaagggcctgaaggcgatcaaggcgaccgaggac
gacctctacggcagctatctggccgaggacatcgtcaatttccagaccggcgagatctat
ctcgaagccggcgacgagatcgacgagaagacgctgaaggttctgctttcgacgggcgcg
gaagagttccaggttctcgatatcgaccacatcaatgtcggcggctacatccgcaacacg
ctcgcggttgacaagaacgagagccgccaggacgcgctgttcgacatctaccgtgtaatg
cgtcccggcgagccgcccacgatcgacaccgccgaggcgatgttcaactcgctgttcttc
gatgcggaccgctatgacctctcggccgtcggtcgcgtcaagatgaacatgcgcctcgac
ctcaaggccgaggacaccgttcgcgtgctgcgcaaggaggacatccttgccgtggtcagg
acgctggtcgaactgcgcgacggcaagggcgagatcgacgatatcgacaatctcggcaac
cgccgcgtgcgttcggtcggcgagctgatggaaaaccagtatcgcgtcgggctgcttcgc
atggagcgcgcgatcaaggagcgcatgtcgtcgatcgagatcgacaccgtcatgccgcag
gatctgatcaacgccaagccggcggccgccgccgtgcgcgagttcttcggttcctcgcag
ctctcgcagttcatggaccagaccaacccgctgtcggagatcacccacaagcgccgcctt
tccgcgcttggacccggcggtctgacccgcgagcgcgccggcttcgaggtgcgcgacgtg
cacccgacgcattacggccgcatctgcccgatcgaaacgccggaaggcccgaacatcggt
cttatcaatagcttggcgacgtttgctcgtgtcaataagtacggcttcatcgagacgccg
taccgcaagatcgtcgacggcaaggtgacgctggacgtcagctatctgtcggccatggaa
gagtccaagcactatgtcgcgcaggccaacgcccagctcgacaaggacggccgcttcgtc
gacgaattcgtcatctgccggcatgccggcgaggtgatgatggcgccgcgcgaaaacgtc
gacctgatggacgtatcgccgaagcagctcgtttcggtcgccgcggcgctgatcccgttc
ctggagaacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgtcaggccgtg
ccgctggtgcgcgccgaagcgccgttcgtcggcaccggtatggagccgatcgtcgcccgt
gactcgggcgccgcaatcggcgcacgccgcggcggcatcgtcgaccaggttgatgcgacg
cgtatcgtcatccgcgcgacggaagatctcgatccgggcaaatccggcgtcgacatttac
cggctgatgaagttccagcgctcgaaccagaacacctgcatcaaccagcgtccgctggtc
aggatgggcgacaaggtcaacaagggcgacatcatagccgatggcccgtcgaccgatctc
ggcgatctggcgctcggccgcaacgtgctcgtcgcgttcatgccctggaacggctacaac
tacgaggatctgatccttctctccgagaagatcgtgtcggacgacgtcttcacctcgatc
cacatcgaggagttcgaggtcatggcccgcgacaccaagctcgggcctgaggaaatcacg
cgcgatatcccgaacgtctcggaggaagcgctgaagaacctcgacgaggccggcatcgtc
tatatcggtgcggaagtgctgccgggcgacatcctggtcggcaagatcacgccgaagggt
gagagcccgatgacgccggaggaaaagctcctgcgcgccatcttcggcgagaaggcttcg
gacgtgcgcgatacctcaatgcgcatgccgcccggaacctacggcacggtcgtcgaagtc
cgcgtgttcaaccgccacggcgtggagaaggacgagcgcgccatggcgatcgaacgcgag
gagatcgagcgtctcgcaaaggaccgcgacgacgagcaggcgatcctcgaccgcaatgtc
tattcgcgcctttccgacatgcttgtcggcaaggaagcgatcgctgggccgaagggcttc
aagaagggcaccaagctctccagggagatgctcggcgagtacccgcgttcgcagtggtgg
cagttcgccatcgaggacgagaagctgcagagcgagctcgaggcactgcgcggccagtac
gacgattccaagaaggcgctcgagcagcgcttcatggacaaggtcgagaaggtgcagcgc
ggcgacgagatgccgcccggcgtcatgaagatggtcaaggtcttcgtggcagtgaagcgc
aagatgcagcccggcgacaagatggccggccgtcacggcaacaagggcgtcgtctcgcgg
atcgttccggtcgaggacatgccgttcctcgaggacggcacgcatgccgatatcgtgctc
aatccgttgggcgtgccgtcgcgcatgaatgtcggccagatcctggagacgcatctgggc
tgggcctgcgccggtatgggcaggaagatcggcgagatgatcgaagcctacaaggccgat
ggcaacatcaagccgctgagggccgagatcgaggacctgatcccggagaacgaccgcaac
gaaccggttcgccagttcgacgacgagtcgatcgttcgcctcggcgagcagatgaggcgt
ggcgtttcgatcgcaacgccggtgttcgacggcgcgcacgaagtccacatcaacgagatg
ctggaacgggcgggccttcacaccagcggccagtcgcagctctatgacgggcgcacgggc
gaaccgttcgatcgcaaggtgacgatgggctacatatatatgctcaagcttcaccacctc
gtggacgacaagatccacgcgcgctcgatcgggccttactcgctcgttacccagcaaccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggcgagatggaggtctgggcgctc
gaagcctacggcgccgcctacacgctgcaggaaatgctgaccgtgaagtcggacgacgtg
gcgggccgcaccaaggtctacgaagcgatcgttagaggcgacgacagcttcgaggccggc
attccggagagcttcaacgttctcgtcaaggaaatgcgctcgctcggcctcaatgtcgaa
ctggaaaacaccaggatcgacgaactgccggcgcgtctgcctgacgctgcggagtaa
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