Candidatus Methanoplasma termitum: Mpt1_c06170
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Entry
Mpt1_c06170 CDS
T03540
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mear
Candidatus Methanoplasma termitum
Pathway
mear03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mear00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mpt1_c06170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mear03019
]
Mpt1_c06170
03009 Ribosome biogenesis [BR:
mear03009
]
Mpt1_c06170
Enzymes [BR:
mear01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mpt1_c06170
Messenger RNA biogenesis [BR:
mear03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mpt1_c06170
Ribosome biogenesis [BR:
mear03009
]
Prokaryotic type
rRNA helicases
Mpt1_c06170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIZ56503
UniProt:
A0A0A7LBW6
LinkDB
All DBs
Position
648035..649447
Genome browser
AA seq
470 aa
AA seq
DB search
MISNFTDLGISEDIAKAMDDIGWEEPTPIQKASIPLGLKGTDMFGQAQTGTGKTGAFGTI
ILQRTEPKQRLPTSIILVPTRELANQVSDQLTDIAKYTGHKSVPIYGGASIEGQMKQLEK
GADIIAGTPGRVKDMINRGILNLSKIEIMVLDEADRMLDMGFIEDIEDILKAMPRNRQTL
LFSATMSEDVKRLAGDYMIKPKEISVSQDEVVLDLTKQYYIPVGRRNKSWALTRILDIDK
PKAIIFCQTKKMVDILDERLTSFRYKVKAIHGDMPQSKRERVLSDFKEDKIEILIATDVA
ARGLDIDDISYVINYDMPEDIETYIHRIGRTGRAGKEGVAISFVTTEEEYLIREFELRTE
MKIEKRDVPEGEEGTKDTIRRVVDYDQLSDVYGMVKFEINLGKNDGLGKVSLAEHLIRAA
KIRDFAIGKIELGPESSVVEVHKDFGNRMTMDLPKVKFKNKRVTVKVVQN
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgatctcaaatttcacagacctaggtatttcagaagatattgcaaaagccatggatgac
atcggttgggaagaacccacccccatacaaaaagcatcgatcccgttgggtttgaagggg
actgatatgttcgggcaggcccagaccggaacaggaaagaccggtgcgttcggaacaata
atccttcaaaggacggagccgaaacagagacttcccacatcgataatccttgtgcctaca
agggagcttgccaaccaggtgtccgatcagctgacggatatcgcaaaatacaccggacat
aaaagcgtcccgatatacggcggagccagcatcgaggggcaaatgaagcagttggaaaaa
ggtgcggatatcatcgccgggacccccggaagggtgaaggatatgatcaacagaggcatc
ctcaatctcagcaagatcgagatcatggtcctggatgaagcggacaggatgttggacatg
ggattcatcgaggatattgaagatattctcaaagcgatgccgaggaacagacagacgctg
cttttctcagcaacgatgtccgaggacgtgaaacgtctggccggcgactatatgatcaaa
ccgaaagagatcagcgtctctcaggacgaggtcgttctggatctaacaaaacaatattac
ataccggtggggagaaggaacaaatcctgggcactgacaaggatactcgatatcgataaa
cccaaagcgataatattctgccaaacaaagaaaatggtcgatatactcgacgaaaggctc
acaagcttccgttataaggtcaaggccatccatggagatatgcctcagtcgaaaagagaa
agggtgctcagcgatttcaaagaggataagatagagatactcatagcaacggacgttgcc
gcgagaggcctggatatagatgatatctcttacgttatcaactacgacatgcctgaggac
atcgagacatacatccacagaattggacgtaccggaagggcaggcaaggagggagttgcc
atctctttcgttactactgaagaggaataccttatcagagaattcgagctcaggacagaa
atgaagatcgagaaaagagatgttccggagggtgaggaaggaacaaaagacaccataaga
agagtggtcgactatgatcagctctctgatgtttacggtatggtgaagttcgagatcaat
cttgggaagaatgacggtctcggaaaggtaagtctcgcagagcatttgatcagagcagct
aagatcagagatttcgcaataggaaagatcgaactcggaccagaatcatcggttgtcgaa
gtacacaaagacttcgggaacaggatgacaatggatctacccaaggtgaaattcaaaaat
aagagagttaccgtgaaagtggtgcagaactga
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