Methylophaga frappieri: Q7C_853
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Entry
Q7C_853 CDS
T02056
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mec
Methylophaga frappieri
Pathway
mec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q7C_853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mec03019
]
Q7C_853
03009 Ribosome biogenesis [BR:
mec03009
]
Q7C_853
Enzymes [BR:
mec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q7C_853
Messenger RNA biogenesis [BR:
mec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q7C_853
Ribosome biogenesis [BR:
mec03009
]
Prokaryotic type
rRNA helicases
Q7C_853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
GET4
AAA_19
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AFJ02022
UniProt:
I1YGH9
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All DBs
Position
896793..898592
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AA seq
599 aa
AA seq
DB search
MSTEQHDAAPSFSELGLAPAILEAVQQAGYETPSPIQAQSIPPLLTGRDLLGQAQTGTGK
TAAFSLPLLSRLDLKSKATQLLVLAPTRELAIQVSEAMQSYARHLKDFHILPIYGGQSVG
IQLRALKRQPQVIVGTPGRILDHIRRRTLKLDQLQALVLDEADEMLRMGFIDDVETILQQ
TPDSRQVALFSATMPGPIHRVAQKYLKDPVEVRIKSNTSTVETINQRYWQVTGLHKLDAL
TRILEVENFDGMIIFVRTKNATVELAEKLEARGYSASAINGDMNQALREKTIERMKKGQI
DILIATDVAARGLDIERMSHVVNYDIPYDTESYVHRIGRTGRAGRQGEAILFVSPREKRM
LAAIEKATRQTITRMQLPSTEEIADRRVIQFMETLTETIESQDLSYFENLMQRYQQEHNA
DPMDMAAALTYLLQKDRPLNPPVKHVSERKPRENANERQFNDERLPRRERRKDFRADDRH
PTDPDMDIYRAEVGRVDNVEPRNLVGAIANEAGIESRFIGRITINEDHSLINLPQGMPKD
IFQHLRKVWVANKQLNLSLANDEIDNSPAPIRPKLNKARGAGRALNAGNRPKQRTSKKR
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagaacaacacgatgcagcgccctcattttctgagttagggctagcccccgct
attcttgaagccgtacaacaagctggctatgaaacgccctcacctattcaggcgcagagt
attccaccgctgctcaccggccgcgatctgttgggtcaggcacaaaccggcaccggtaaa
accgcggctttctctctgccgttattaagccgacttgacctaaaaagcaaagccacacag
ctactcgtgctggctccgacgcgggaattggccattcaggtatctgaagcaatgcaatct
tatgcccggcacctgaaagattttcatattctgccgatttacggcggtcaaagtgtcggc
attcaattacgggcgttaaaacgccaacctcaggtaattgtcggtacgccaggtcgaatt
ttggatcatatccggcgtcgaactttgaaactcgatcaattacaggctttggtgctcgat
gaagccgatgaaatgctgcgcatgggcttcatcgatgatgttgaaaccattctgcagcag
acaccggatagtcgtcaggttgccttattttccgcaaccatgcctggcccgattcatcga
gtggcgcaaaaatatctgaaggatccggttgaagtccgtatcaagtcaaacacgtcaaca
gtcgaaaccataaaccaacgctactggcaggtcacaggtctacacaagctggacgcactg
acccggattctggaagtcgaaaactttgatggcatgatcatctttgtccgcaccaaaaat
gccacggtggaactggcagaaaaactagaagcacgtggctattccgcttcagctatcaat
ggcgatatgaatcaggccttgcgagagaaaaccattgaacgcatgaaaaagggacaaatt
gatattctgattgccacggatgttgctgctcggggactggacatcgagcgcatgagccat
gtggtgaattacgatatcccttatgataccgagtcttacgttcaccgaattggccgtacc
ggccgtgctggtcgccagggcgaagccattctgttcgtgtcaccgcgcgaaaaaagaatg
ttggcggcgattgaaaaagcaacacgccaaaccatcacccgcatgcagctgccgagcacg
gaagaaattgccgaccggcgtgttatccagtttatggaaaccttaacggaaaccatcgaa
tctcaggacctgagttattttgaaaacttgatgcaacgttatcagcaagagcataacgct
gacccgatggatatggctgctgcattgacctatctactgcaaaaagatcggcctctcaac
ccgccagttaaacatgtcagcgaacgcaaaccacgagaaaacgccaacgaacgacagttt
aatgatgagcgtctacctcgccgcgagcgacgcaaggattttcgtgcggatgaccgccac
ccaactgatcctgatatggacatttatcgcgccgaagtcggccgtgttgataatgttgag
ccacgtaatctggttggcgccattgccaacgaggccggtatcgaaagccgctttattggc
cggattaccattaatgaagatcacagtttaattaatttgccgcagggcatgcccaaagat
atcttccaacatctgcgtaaggtttgggtcgccaacaaacaactcaatttgagccttgct
aacgatgagatcgataattctccggctccgattcggcccaagctgaataaggcgagagga
gcaggaagagcgcttaatgcgggtaatcgccccaaacagcgcaccagcaaaaagcgctaa
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