Methylomarinum roseum: Q9L42_001645
Help
Entry
Q9L42_001645 CDS
T10194
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mech Methylomarinum roseum
Pathway
mech03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mech00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q9L42_001645 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mech03021
]
Q9L42_001645 (rpoB)
03400 DNA repair and recombination proteins [BR:
mech03400
]
Q9L42_001645 (rpoB)
Enzymes [BR:
mech01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q9L42_001645 (rpoB)
Transcription machinery [BR:
mech03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q9L42_001645 (rpoB)
DNA repair and recombination proteins [BR:
mech03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q9L42_001645 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
HsdM_N
Motif
Other DBs
NCBI-ProteinID:
XBS20862
UniProt:
A0AAU7NV43
LinkDB
All DBs
Position
complement(274919..278995)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRNNFGKGTEVLEVPYLLATQIDSYANFLQDGVAPDKREDRGLHAAFLSV
FPIVSHSGYAVLEYVKYRLGEPTFDVRECQQRGATYAAPLRVLVRLVIYDKDAPANAKVV
KDIREQEVYMGELPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFNA
RVIPYRGSWLDFEFDHKDALYVRIDRRRKIPATILLRALGYENEEMIDIFFETNKFSISP
DKFLYHIIPERLRGEMAVFDIKHDGKVLVEEGRRITAKHIRQMNKANVDVIEVPRDYLYG
KILGHNIIDESTGELVAEVNAELTEELLQKLIDAGITEINTLFVNDLDKGPYISNAMSLD
TTTNRLEALVEIYRMMRPGEPPTKESAENLFENLFFTEERYDLSAVGRMKFNRRLGREEI
IGSGTLSKEDIIDVLKELIDIRNGNGNVDDIDHLGNRRVRSVGEMIENQFRVGLVRVERA
VRERLTLADSEGYMPQEIINAKPVSASVKEFFGSSQLSQFMDQNNPLSQVTHKRRVSALG
PGGLARERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNSYGFLETPYRRV
VDGVVTDQVDYLSAIEEGEYVIAQSSVAVDENFKLIEGLVSCRYKDEFTLASSDTVQYMD
VSSKQIVSVAASIIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERVVAKDSGV
AVVATRGGSIEAVDAARIVVRVNDEETVSGVPGVDIYNLTKYTRSNQNTCINQKPLVKPG
DSVRAGDILADGPSTDIGELALGQNMLIAFMPWNGYNFEDSILVSERVVKEDRFTTIHIE
EKTCVARETKHSPEEITADIPNVSEEALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKAADVKDTSLRVPGNIRGTVIDVQVFTRDGVKKDKRALEIEEAEIQ
RFRKDLDDQLKILEKDIFSRVANLLIGKKAEKGPAGLKKGAEISREYLDGLRQSEWLKIR
TQDEDVNVQLEKVAEQIEQQRKQFDERFEQKRKKITMGDDLAPGVLKMVKVYLAVKKCIQ
PGDKMAGRHGNKGVISQIVPIEDMPYTADGTPVDILLNPLGVPSRMNVGQVLETHLGWAA
KGLGIKIGKMLEAQAKVAEIRQFLEKIYNSSGKKENLDVFSDQEILEMAANLVGGVPMAT
PVFDGAGEDEIRTMLKLADLPEHGQTRLYDGLTGEPFEREITVGYMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTRM
YKNIVDGNHTMEAGMPESFNVLIKEIRSLGVNIELEQE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcttttaccgaaaaaaagcgtatccgtaacaactttgggaaaggtactgaa
gtactggaagttccctatcttttagcaacacaaatcgattcttatgctaattttttgcaa
gatggcgtagctcccgacaaaagggaagatcgtggtttgcatgcggcatttttaagtgtt
tttccaattgtaagtcattctgggtatgccgtcctggaatatgttaaatatcgcttagga
gagcctactttcgatgtaagagaatgccagcaacgcggtgcgacctatgcggcgccgctg
agggtgttggtgcgcctggtcatctatgataaagatgcgccggccaatgccaaagtcgtc
aaagatatcagggagcaagaagtctacatgggtgaattacccttaatgacagataacggc
acatttgtcattaatggtacggaacgggtcatcgtgtcccaattgcaccggtctccgggc
gtattttttgaccatgacaagggtaagactcactcatccggtaagctgctgttcaatgcc
cgtgtaatcccttatcgcggctcctggttggatttcgaattcgaccataaggatgcactt
tacgtcagaatagacagacgccgtaaaattccggctacgatcttattgagagccttgggc
tatgaaaacgaagagatgatcgatatcttcttcgaaaccaataagttcagtatcagccct
gataaattcctctaccatatcatccctgagcgtctgcgtggtgaaatggcggtattcgat
atcaagcatgacggcaaggtgctggtcgaagaaggacgaaggattaccgcgaagcatatt
cgccagatgaacaaggcgaatgtcgatgttatcgaggttccgagggattatttatacggt
aaaattcttggccacaacatcatcgatgagtccaccggtgagctggttgccgaagtcaat
gccgaactgaccgaagaattgttgcaaaaattgatcgatgccggcatcaccgaaattaat
acgctgtttgttaatgatttggacaaaggtccgtatatttccaacgcgatgtcgttggat
acgacgaccaaccgtctagaagcgttggtcgaaatttaccgaatgatgcgtccaggcgag
ccgcccaccaaggaatcggctgaaaacttgtttgaaaatctgttcttcaccgaagagcgc
tacgatttatcggcagtgggacggatgaaattcaaccgtcgcttaggtcgcgaagaaatt
atcggctccggcacgttgagcaaagaagatatcatcgatgtgctgaaagaattgatcgat
atccgcaacggcaacggcaatgtcgacgacatcgaccacctcggtaaccgtcgtgtccgt
tcggtcggcgagatgattgaaaaccagttccgcgtgggcttggtcagagtcgagcgtgcg
gtgagagaaagattgacgctggccgattccgaaggctacatgccacaggaaatcatcaat
gccaagccagtgtcggcatcggtcaaggaattttttggttcgagtcagttgtcgcagttc
atggatcaaaacaacccattgtcacaggtgacgcacaagcgtcgtgtctccgcattgggc
ccgggcggtctggcgagagagcgcgccggcttcgaggtgcgagacgtacataccactcat
tacggtcgtgtgtgtccgatcgaaacacccgagggtccgaatatcggtctgatcaactcc
ttgtcggtgtatgcgcgcactaactcctacggtttcctggaaaccccttatcgtagagtg
gtggacggcgtggtgaccgaccaggtcgattatctgtcggcgatcgaagaaggcgaatac
gtcattgcgcaatcgagtgtggccgtcgatgaaaacttcaagctgattgaaggcttggtt
tcttgtcgctataaagacgaattcacgttggcctcgtcggataccgtgcaatatatggat
gtttcctcgaaacagattgtttctgtggctgcatcgattattccattcctggagcatgac
gatgctaaccgcgcgttgatggggtcaaacatgcagcgtcaagcggtgcctacgttgcgt
gcggaaaaacccttggtcggaaccggcatggaacgtgtcgttgctaaagattcgggcgtc
gccgtggttgcgacgcgcggaggaagcatcgaggcagtcgatgcggcgcgtatcgtggtg
cgcgtcaatgacgaagaaactgtttccggcgtacccggcgtggatatttacaacctgact
aaatacacgcgttccaaccagaatacctgtatcaatcagaagccactggttaaaccgggc
gatagcgtgcgggccggcgatatattagccgacggaccgtccaccgatatcggcgagttg
gcgttaggtcaaaacatgttgatagcgttcatgccgtggaatggttataacttcgaggac
tccattctggtctcggaacgcgtagttaaagaagatcgcttcacgacgatacatatcgaa
gaaaaaacctgtgtcgctcgtgaaaccaagcatagtcccgaagaaattaccgccgatatt
cctaatgtcagcgaagaggcgttatcgaaactggatgaatccggtatcgtttatgtcggc
gccgaagtcaaaggcggtgatattttggtcggcaaggtcacgccgaaaggcgagacccag
ctgacgccggaagaaaagctgctgcgtgctatttttggcgaaaaagccgccgatgttaaa
gatacctcgttgcgcgttcccggcaatatccgtggtactgtgatcgacgtacaggtcttc
actcgcgacggcgtcaagaaggacaagcgcgccttggaaatcgaggaagcggaaatccaa
cgttttcgcaaagacctggacgatcaattgaaaattttggaaaaggatattttcagtcgt
gtggccaatctgttgatcgggaaaaaagcggagaaaggtcccgccggattgaaaaaaggc
gcggaaatcagccgagaatatttggatggtttgagacaatccgaatggttgaaaatcaga
actcaagacgaggatgtcaatgttcagttggagaaggtcgctgaacagatcgagcaacaa
cgtaagcagttcgatgagcgtttcgaacaaaaacgtaaaaagatcacgatgggtgacgat
ttggccccgggtgtgctgaaaatggtcaaggtctatctggcggttaagaaatgcatacaa
ccaggtgacaagatggcgggccgtcacggaaacaagggggtcatctcgcaaatcgtgccg
atcgaagacatgccgtacacagccgatggtacgccggtcgatatcttgctgaatcctcta
ggggtgccctctaggatgaacgtcgggcaggtgctggaaacccatttgggatgggctgct
aagggtctggggatcaagatcggcaagatgttggaagcgcaggcaaaagtcgccgaaatt
cgacagtttttggagaaaatctacaacagtagcggtaagaaagagaatctggatgtgttc
tccgatcaggaaattttggaaatggcggctaatttggtcggtggtgtgccgatggcgact
ccggtcttcgatggcgccggcgaagatgaaattcgtacaatgctgaaattggccgacttg
ccggaacatggtcaaacgaggctttatgatggcttgaccggtgaaccgtttgaacgggaa
atcaccgtcggctatatgtatatgctgaaactgaatcacttggtggatgacaagatgcat
gcgcgttcgaccggtccatacagtttggtcacccagcaaccgctgggcggtaaggcgcag
ttcggtggccagcgtttcggcgagatggaggtttgggcgctagaagcatacggtgcggct
tataccttgcaggaaatgctcacggttaagtctgatgacgtgacaggtagaacccgtatg
tataaaaacattgttgatggtaatcatacaatggaagccggtatgccggaatcattcaac
gtactgattaaagaaatacgttcgctgggtgtaaacatcgaattggagcaggaataa
DBGET
integrated database retrieval system
