Methylococcus sp. EFPC2: JWZ97_14095
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Entry
JWZ97_14095 CDS
T10116
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
meef Methylococcus sp. EFPC2
Pathway
meef03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meef00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JWZ97_14095 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meef03021
]
JWZ97_14095 (rpoC)
03400 DNA repair and recombination proteins [BR:
meef03400
]
JWZ97_14095 (rpoC)
Enzymes [BR:
meef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JWZ97_14095 (rpoC)
Transcription machinery [BR:
meef03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JWZ97_14095 (rpoC)
DNA repair and recombination proteins [BR:
meef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JWZ97_14095 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QSA96345
LinkDB
All DBs
Position
complement(3264825..3269036)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLINFLKRQSQTEEFDGIRISLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVSDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRIALLLDMTLREIERVLYFESHVVIDPGMTPLQRGQLLTEEEYNEALQQHGDEVSAKM
GAEAIRDLLKTLDLHGEVQRLREEIDSTNSETKIKKHSKRLKAIESLIASNNKPEWMILT
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFIFSKLQFRGLATTIKAAKKMVERESAEVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RSLMMATNNILSPANGEPIINPTQDVVLGLYYMSRERVGAKGEGMLFADTDEVLRAYQNG
VVDLQAKVTVRIREVLLDENGQKQPAITRRVETTAGRAIIWTVVPDGIAFDLINQDMTKK
SISRLINHCYRTLGVKSSVVFADQLMYTGFSYATRSGVSIGFEDMAVPPRKEEIIQAAEQ
EVKEIQNQYASGLVTDGERYNKVVDIWSHANDQVAKVMMEGLGTEAAVGKDGKTVQQKSF
NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITEDDCGTNDGLLMSPLIEGGDVVEPLAERV
LGRVLAEDVRHPATEELIVDAGTLLDEHWVGVLEANSIDNVRVRSVISCKTRHGVCSSCY
GRDLGRGHKVNIGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAISNIEVKSAGSIK
LSNLKTVANKDGQLVAVSRSGEVSVIDDHGRERERYKIPYGAVLSVHEGGAVRAGQVVAN
WDPHTHPVITEVQGIARLVDFVDGVTVREQSDEVTGLSSMMVIDPKQRGGAGKELRPMVK
LVDQHGNDIFIPNTEIAAQYVLPAGAIVSIRDGGEVGVGDVLARIPQESSKTRDITGGLP
RVADLFEARKTKDPAILAEATGTISFGKETKGKRRIVITDAAGEQHETMIPKWRHVTVFE
GEHVEMGETIAEGELTPHDILRLRGVAELSSYLVKEIQDVYRLQGVKINDKHIEVIIRQM
LRKVEITAMGDSSFLKGEQVDRARVLEENEGLEAEGKIPACYESVLMGITKASLSTESFI
SAASFQETTRVLTEAAIRGLSDKLMGLKENVIVGRLIPAGTGLAYHLERKERHQLEEQAE
AEPTETTLDTSDVEEALKQALNM
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttgatcaattttttgaagcgtcagagccaaaccgaagaattcgacggtatc
cgcatcagtctggcatcgcccgacatgatccgttcctggtcctacggcgaggtgaagaaa
cctgaaaccatcaactaccgcaccttcaagccggagcgcgacggcctgttctgcgccaag
atcttcgggccggtcagcgattacgagtgcttgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgaaaagtgcggcgtggaagtcaccctgtccaaggtgcgccgcgag
cgcatgggccatatcgaactggccagcccggtcgcccacatctggttcctcaagtcgctg
ccctcacgcatcgctctgctgctggacatgacgctgcgcgagatcgagcgcgtgctctat
ttcgaatcgcacgtcgtcatcgatcccggcatgaccccgctgcagcgcggccagttgctg
accgaggaagaatacaacgaagccttgcaacagcacggcgacgaagtcagcgccaagatg
ggcgccgaagccatccgtgacctgctgaaaacgctggacctgcacggcgaagtgcagcgc
ctgcgcgaggaaatcgacagcaccaactccgaaaccaagatcaagaagcactctaagcgc
ctgaaggccatcgaatccctgatcgcttccaacaacaagccggaatggatgatcctgacc
gtgctgccggtgttgccacccgaactgcgcccgctggtgccgctggacggcggccgcttc
gcgacctcggatctgaacgatttgtaccgccgcgtcatcaaccgcaacaaccgtctgaag
cggctgctggacctgaatgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatccgtcgacgccctgctggacaacggccgccgcggccgcgccatcaccggctccaac
aagcgtccgctgaagtctttggccgacatgatcaagggcaagcagggtcgtttccgccag
aacctgctgggcaagcgcgtcgactattccggccgttcggtcatcgtggtcggcccgacg
ctcaagctgcatcagtgcggtctgcccaagaagatggcgctggaattgttcaagcccttc
atcttcagcaagctgcagttccgcggcctggcgaccaccatcaaggcggccaagaagatg
gtcgaacgcgagagcgcggaagtttgggacatcctcgacgaggtgatccgcgaacatccg
gtcatgctgaaccgcgcgccgaccctgcatcgcctgggcatccaggccttcgagcccatc
ctggtcgagggcaaggcgatccagttgcatccgctggtgtgtaccgcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctgtcgctggaggcccagttggaggcg
cgctccctgatgatggcgaccaacaacattctttcgccggccaacggtgagcccatcatc
aatccgacgcaagacgtggtgctcggtctctactacatgagccgcgagcgcgtgggtgcc
aagggcgagggcatgctgttcgccgacacggacgaggtgctgcgcgcctaccagaacggc
gtcgtcgacttgcaggccaaggtgaccgtgcgcatccgcgaggtcttgctggacgagaac
ggccagaagcagccggcgatcacccgtcgtgtcgagaccaccgcaggccgcgccatcatc
tggaccgtcgtgccggacggcatcgcgttcgatctgatcaatcaggacatgaccaagaag
tccatctcccggctgatcaaccattgctatcgcaccctgggcgtcaagagctccgtggtc
ttcgccgaccagctgatgtacacgggcttctcctatgccacccgctccggtgtgtccatc
ggattcgaggacatggcggtgccgccgcgcaaggaggaaatcatccaggcggccgagcag
gaagtgaaagaaatccagaaccagtatgcttccggtctggtcaccgacggcgagcgctac
aacaaggtcgtcgacatctggtcgcacgccaacgaccaggtcgccaaggtgatgatggaa
gggctgggtaccgaggcggccgtcggcaaggacggcaagacggtgcagcagaaatccttc
aattccatctacatgatggccgattccggcgcccgtggttccgcggcgcagattcgtcag
ctcgccggcatgcgcggcttgatggccaagccggacggctccatcatcgaaacgcccatc
accgcgaatttccgcgagggtctggacgtattgcagtacttcatctcgacccacggcgct
cgcaagggtctggcggataccgcgctgaagaccgccaactcgggctatctcacccgccgt
ctggtcgacgtggcgcaggatttggtcatcaccgaggacgattgcggtaccaacgacggt
ctgctgatgtcaccgctgatcgaaggcggcgacgtggtcgagccgctggccgagcgggtg
ctgggtcgcgtcctggccgaggatgtccgccatcccgccacggaagagttgatcgtcgat
gcgggtaccctgctggacgaacattgggtgggtgtgctggaagcgaacagcatcgacaac
gtgcgcgtgcgttcggtcatcagctgcaagacccgccacggcgtgtgctcgtcctgctac
ggccgcgacctggggcgcggtcacaaggtcaacatcggcgaagccatcggcgtcatcgcg
gctcagtcgatcggcgaacccggcacccagctgaccatgcgtaccttccacatcggcggt
gcggcatcccgttcggcggcgatcagcaatatcgaggtcaagtcggccggttcgatcaag
ctgagcaatctcaagacggtcgccaacaaggacggccagttggtcgcggtatcgcgttcg
ggcgaagtcagcgtcatcgacgatcacggtcgcgagcgcgagcgctacaagatcccgtac
ggtgcggtgctgtccgtgcatgaaggcggtgcggtgcgggccgggcaagtcgtggccaat
tgggatccgcatacccatccggttatcaccgaggtgcagggtatcgcccgcctggtcgat
ttcgtcgatggcgtgacggtgcgcgagcagtcggacgaggtcaccggcttgagctccatg
atggtgatcgaccccaagcagcgcggcggcgcgggcaaggaattgcgccccatggtcaaa
ctggtggaccagcacggcaacgacattttcatccccaataccgaaatcgcggcacagtac
gtgttgcccgccggcgcgatcgtgagcatacgcgacggcggcgaagtcggggtgggtgac
gtattggccaggataccgcaggaatcgtccaagactcgcgacatcaccggcggtctgccg
cgcgtcgccgacctgttcgaggcgcgcaagaccaaggatcccgcgatattggcggaggcc
acgggcaccatcagcttcggcaaggaaaccaagggcaagcgccgcatcgtcatcaccgac
gccgcgggcgagcagcacgagacgatgatcccgaaatggcgccacgtcacggtgttcgaa
ggtgaacatgtggagatgggcgaaaccatagccgaaggcgaattgaccccgcacgacatc
ttgcgtctgcgcggtgtggccgagctgtcgtcctacctggtcaaggaaatccaggacgtc
tatcgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcatccgccagatg
ttgcgcaaggtggaaatcaccgccatgggcgattcgagcttcctcaagggcgaacaggtg
gaccgtgcccgcgtgctggaagaaaacgagggcctggaagccgagggcaagataccggcg
tgctacgagtcggtgctcatgggtatcaccaaggcttcgctgtccaccgagtcgtttatt
tcggcggcgtcgttccaggaaaccacgcgcgtactcaccgaggccgccatccgcggtttg
agcgacaagctgatgggcctgaaggaaaacgtcatcgtcggccgcttgatacccgcgggc
accgggctcgcctaccatctggagcgcaaggagcgtcatcagctggaagagcaggcggaa
gcggagccgaccgagacgacactggatacctcggatgtggaagaggcgctcaagcaggct
ctcaacatgtaa
DBGET
integrated database retrieval system
