Methylococcus sp. EFPC2: JWZ97_14100
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Entry
JWZ97_14100 CDS
T10116
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
meef Methylococcus sp. EFPC2
Pathway
meef03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meef00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JWZ97_14100 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meef03021
]
JWZ97_14100 (rpoB)
03400 DNA repair and recombination proteins [BR:
meef03400
]
JWZ97_14100 (rpoB)
Enzymes [BR:
meef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JWZ97_14100 (rpoB)
Transcription machinery [BR:
meef03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JWZ97_14100 (rpoB)
DNA repair and recombination proteins [BR:
meef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JWZ97_14100 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
QSA96346
LinkDB
All DBs
Position
complement(3269106..3273182)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRKSFGKRQDVLDVPYLLATQVESYKKFLQADTPLARRIDDGLHAALKSV
FPIESHTGHAVLEYVSYRLGEPVFDVKECQQRGTTYAAPLRVLVRLVIYDKEAPASAKVV
KDIKEQEIYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFNA
RIIPYRGSWLDMEFDHKDCVYVRIDRRRKLPATVLLRALGYDNEAIISLFFDTNPFTFAD
GQILLDLIPERLRGEIASFDIKVDDKVIVEKAQRITARHIRLLEKGGVTQMEVPRDYLHG
KILAHNVIDTTTGELVAKVNDEITDDLVGKMIAAGVSKIETLFVNDLDRGPYVSNAMRID
TTETQLDALVEIYRMMRPGEPPTKESAQALFENLFFTSDRYDLSAVGRMKFNRRLGRVEI
TGAGVLSKEDIIDVLRELIAIRNGNGQVDDIDHLGNRRVRSVGEMVENQFRLGLVRVERA
VKERLSLADSEGLMPQEIINAKPVAASIKEFFGSSQLSQFMDQSNPLSEITHKRRVSALG
PGGLARERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFLETPYRKV
VDNRVTDEIEYLSAIEEGKYYIAQASAAVDENGYLRDGLVSARYKDEFTLSTPEKINYMD
VSSKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERIVAKDSGV
AVVARRGGYIESVDASRIVVRVNDDETEAGIPGVDIYNLTKYTRSNQNTCINQRPLVKTG
DVVARGDVLADGPSTDMGELALGQNLLVAFMPWNGYNFEDSILISERVVQDDRFTTIHIE
EKACVARDTKLGPEEITADIPNVGEAALAKLDESGIVYIGAEVKAGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMDGTVIDVQVFTRDGVKKDERARQIEEAEIE
RVKKDLNDQLRIIEKDIYDRVEHLLVGKVSESGPAGLKSGKTIDLDYLQSLKPSQWLDIR
TQDEDVNVQLETVAAQIQQQREEFNLRLEEKKRKITMGDDLAPGVLKMVKVYLAVKRRIQ
PGDKMAGRHGNKGVISRIVPVEDMPHTADGTPMDIVLNPLGVPSRMNVGQVLETHLGWAA
KGLGLKLGKMLDAQAKIVELREFLEQIYNRTGRKESLDQFNDAEIIELASNLRKGVPMAT
PVFDGAIEEDIREMLRLADLPVTGQTRLYDGRTGDAFERPTTVGYMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM
YKNIVDGDHRMEAAMPESFNVLIKEIRSLGINIELEQD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcttttaccgaaaagaaacgcatccgtaagagctttggtaagcgtcaggac
gtactcgacgtaccctatctgctggcgactcaagtcgagtcctacaagaaattcctgcaa
gccgacacacccttggcgaggcggatagacgacggtttgcacgcagcgctcaaatccgtg
tttccgatcgaaagccataccggtcacgcggtactcgaatacgtcagctaccgcttgggc
gagccggtattcgatgtaaaggaatgccagcagcgtggaaccacttatgcggcccccctg
cgggtcttggtgcgcctggtgatctacgacaaggaggccccggcatccgcgaaggtggtc
aaggatatcaaggagcaggaaatctacatgggcgagatcccgctcatgaccgacaccggc
accttcgtcatcaatgggaccgagcgcgtcatcgtctcgcagttgcaccgttctccgggc
gtattcttcgatcatgaccggggtaaaacccactcctcgggcaagctgttgttcaacgcc
cgcatcattccctatcgcggctcttggctggatatggagttcgatcacaaggactgcgtt
tacgttcgcatagaccgacgtcgcaagctgcccgcgacggtgttgctgcgcgccttggga
tacgacaacgaagccatcatttctctctttttcgacaccaatccgttcactttcgcggac
ggacagatattgctggatttgatacccgagcgcctgcgcggtgaaatcgccagcttcgat
atcaaagttgacgacaaggttatcgtcgaaaaagctcagcgcattaccgcacgccatatc
cgcttgctggaaaagggcggcgtgacgcagatggaagtgccgcgtgattacctgcacggc
aagatcctggcccacaacgtgatcgacacgaccaccggcgaactggtggccaaggtcaac
gacgagatcaccgacgatctggtcggcaagatgatagcggcgggcgtgagcaagatagag
acgctgttcgtcaacgatctcgaccgcggcccttatgtttcgaacgccatgcgtatcgat
acgaccgagacccagctcgatgcgctggtcgaaatctaccgcatgatgcgtcccggcgag
ccgccgaccaaggagtcggcccaagccctgttcgagaacctgttttttacctccgaccgc
tacgatctgtcggctgtcggccgcatgaagttcaaccggcggctgggtagagtcgagatc
accggggcgggggtgttgtccaaggaagacatcatcgacgtattgagggagctgatcgcc
attcgcaacggcaacggccaggtggacgacatcgaccatctgggtaaccgtcgcgtgcgt
tcggtcggtgaaatggtggaaaaccagttccgcctggggctggtgcgcgtcgagcgcgcg
gtcaaggagcgtctgtccctggccgattccgaaggcttgatgccgcaggaaatcatcaac
gccaagccggttgccgcttcgatcaaggaatttttcggttccagccagctctcgcagttc
atggaccaaagcaatccgctgtcggaaatcacccacaagcgccgcgtctcggccttggga
ccgggcggtttggcgcgcgagcgggccggtttcgaggtgcgcgacgtgcacaccacgcat
tacggtcgcgtctgcccgatcgaaacgccggaaggcccgaacatcggcctgatcaactcg
ttggccgtctatgcccgcacgaacgaatacggcttcctggaaacgccctatcgcaaagtg
gtggacaaccgggtgactgacgagatcgaatatctgtcggcgatcgaggaaggcaagtat
tacatcgctcaggccagcgccgcggtcgacgagaacggctacctgcgcgacggcctggtt
tccgcccgctacaaggacgagttcaccttgtcgacgccggaaaagatcaactacatggac
gtctcgtccaagcagatcgtgtcggtcgcggcctcgttgatccccttcctggagcacgac
gacgccaaccgtgcgctcatgggttccaacatgcagcgccaggcggtccccaccctgcgg
tccgagaagccgctggtcggcacgggcatggagcgcatcgtggccaaggactccggcgtg
gccgtggtcgcgcggcgcggcggttatatcgaatcggtcgatgcgagccgcatcgtggtc
cgggtcaacgacgacgagaccgaggccggcataccgggcgtggacatctacaacctcacc
aagtacacccgttccaaccagaacacctgcatcaaccagcgtccgctggtgaagaccggc
gacgtggtggccaggggcgacgtattggccgacggcccgtccaccgatatgggtgaactg
gcgctggggcagaacctgctggtcgcgttcatgccctggaatggctacaacttcgaggac
tcgatcctgatttccgaacgggtggtgcaggacgaccgcttcaccacgatacacatcgag
gagaaggcctgcgttgcccgcgacaccaagctgggaccggaggaaatcacggccgacatc
ccgaacgtgggcgaagcggcgctggccaaactggacgaatccggcatcgtttatatcggt
gccgaggtcaaggccggcgacatcctggtcggcaaagtgacgcccaagggcgaaacccag
ctcacgccggaagaaaaactgctgcgcgccatcttcggcgagaaggcctccgacgtgaag
gatacttcgttgcgcgtgccttccggcatggacggcacggtcatcgacgtgcaggtgttc
acccgcgacggggtcaagaaggacgagcgcgcgaggcagatcgaggaagccgaaatcgaa
cgggtcaagaaggatttgaatgaccagttgcgcatcatcgagaaagacatctacgaccgc
gtcgaacacctgttggtgggcaaggtatccgagtcgggtcctgcaggtctgaagtcgggt
aagaccatagacctggattatctgcaaagcctaaaaccgagccagtggctggatatacgc
acccaggacgaagacgtgaacgtccagctggaaaccgtggcggcgcagatccagcagcag
cgtgaagagttcaatctgcggctggaggaaaagaagcgcaagatcaccatgggcgacgac
ctcgcgccgggcgtgctcaagatggtcaaggtctatctggccgtcaagcgccgcatccag
ccgggcgacaagatggccggacgccacggcaacaagggcgtgatttcgcgcatcgtgccg
gtcgaggacatgccgcataccgcagacggcacgcccatggacatcgtcttgaacccgctg
ggcgtgccttcgcgcatgaacgtcggccaggtgctggaaacccatctggggtgggccgcc
aagggcttggggctgaagctcggcaagatgctggacgcccaggccaagatcgtcgagttg
cgcgaattcctggagcagatctacaaccggaccggacgcaaggaatctctggaccagttc
aacgacgcggaaatcatcgagttggcttccaatctgcgcaagggcgtgcccatggcgacc
ccggtgttcgacggcgcgatcgaggaagacatccgcgagatgctcaggctggccgatctc
cccgtgacagggcaaacccgtttgtacgacggccgcaccggcgacgcgttcgaacgcccc
actacggtcggctacatgtacatgctcaagctgaaccacctggtcgacgacaagatgcac
gcccgttccaccggtccgtacagcctggtgacccagcagccgctgggcggcaaggcgcag
ttcggcggccagcgcttcggcgaaatggaagtctgggcgctggaggcctacggcgccgcc
tataccttgcaggaaatgttgacggtcaagtcggacgacgtgaacggccgtaccaagatg
tacaagaacatcgtggacggcgaccaccgcatggaagccgcgatgcccgaatcgttcaac
gtattgatcaaggaaatacgttccctcggcatcaatatcgaattggagcaggactga
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integrated database retrieval system
