Methylomonas sp. EFPC1: JWZ98_03890
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Entry
JWZ98_03890 CDS
T10319
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
meep Methylomonas sp. EFPC1
Pathway
meep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JWZ98_03890 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meep03021
]
JWZ98_03890 (rpoB)
03400 DNA repair and recombination proteins [BR:
meep03400
]
JWZ98_03890 (rpoB)
Enzymes [BR:
meep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JWZ98_03890 (rpoB)
Transcription machinery [BR:
meep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JWZ98_03890 (rpoB)
DNA repair and recombination proteins [BR:
meep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JWZ98_03890 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QSB02109
LinkDB
All DBs
Position
823044..827120
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRNNFGKGSEVLEVPYLLATQIDSYANFLQSGIDPDKRRNQGLHAAFSSV
FPVVSHSGYAVLEYVKYRLGEPAFDVRECQQRGATFSAPLRVLVRLVIYDKDAPANTKVV
KDIREQEVYMGELPLMTDNGTFVINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKLLFNA
RVIPYRGSWLDFEFDHKDAVYVRIDRRRKIPATILLRALGYENEEMIKIFFETNKFSLSA
EKLMFHVIPDRLRGEMAVFDIKHDGNVVIEEGRRITAKHVRQLEKSGVTEIEVPRDYLYG
KILGHNVVDTSTGELLASVNDEITDNLLQKLIDAGVREIDTLYVNDLDRGPYISNSMRLD
TTTNRLEALVEIYRMMRPGEPPTVESAENLFENLFFTDERYDLSAVGRMKFNRRLGREET
EGPGTLSKEDIIDVLKELIKIRNGNGTVDDIDHLGNRRVRSVGEMIENQFRIGLVRVERA
VRERLTLADSEGYMPQEIINAKPVSAAVKEFFGSSQLSQFMDQNNPLSQVTHKRRVSALG
PGGLARERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPYRKV
VDGKVTDQVDYISAIEEGEYVIAQSSVAVDESGKLVEGLVSCRYKDEFTLASSETVQYMD
VSSKQIVSVAASIIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERVVAKDSGV
TVVATRGGRIEAVDAGRIVVRANDEETVAGVPGVDIYNLIKYTRSNQNTCINQKPLVKLG
DIVRAGDILADGPSTDIGELALGQNMLIAFMPWNGYNFEDSILVSERVVKEDRFTTIHIE
EKTCVARETKHSPEEITADIPNVSEEALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKAADVKDTSLRVPGNVRGTVIDVQVFTRDGVKKDKRALEIEDAEIK
RYRKDLDDQLKIVEHDIFARVKTLLAGKKAEKGPNGLKKGEEITADYLDGLVPSELLKIR
TQDEDVNVQLETVAEHVEQQRKEFDERFEQKKKKITMGDDLAPGVLKMVKVYLAVKKRIQ
PGDKMAGRHGNKGVISQIVPIEDMPYTADGNPVDILLNPLGVPSRMNVGQVLETHLGWAS
KGLGIKIGKMLEAQAKVAEIRGFMEKIYNCSGRKEDLNSFTDKEILEMAVNLVAGVPMAT
PVFDGASEEDIRTMLRLADLPEHGQTVLYDGLTGEPFEREVTVGYMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTRM
YKNIVDGNHSMEAGMPESFNVLVKEIRSLAVNIEMEQD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcttttaccgaaaaaaagcgtatccgtaataattttgggaagggttccgaa
gtattggaagttccctatcttttggcaacacaaattgattcgtatgcaaattttttgcag
tccggcatagatccggataaacggcgcaatcaagggctgcatgccgcattctccagtgtt
tttccggtagtaagtcattcaggctatgccgtattggagtatgttaaatatcgcttgggg
gaacccgcattcgatgtaagagagtgtcaacagcgtggcgctacattttcagcgccgttg
cgtgttttagtgcgtctagttatttatgataaagacgcgcctgctaataccaaagtcgtt
aaggatattagagagcaggaagtttacatgggtgaactgcctctgatgaccgacaacggt
acgttcgtgattaacggcactgaacgggtcattgtgtcgcagttgcacagatcgcccggt
gtattttacgaccatgacaaaggtaaaacccattcgtccggtaagttgctgttcaacgca
cgggtaattccttatcgtggttcatggttggatttcgaatttgatcataaagacgccgtt
tacgtgcgtatagacagacggagaaaaattccggcgactattttgttacgggctttggga
tatgaaaacgaagaaatgatcaaaattttcttcgaaaccaacaagttctcattgagcgcc
gaaaaattaatgtttcacgtgatcccggataggttgcgtggtgaaatggctgttttcgat
attaagcacgacggtaacgtcgttatcgaagaggggcgcagaattactgccaaacatgtt
cgccagctggaaaaatccggtgtcactgaaatcgaagtgcctagggactatttgtacgga
aaaattctaggccacaatgttgtcgatacatctaccggcgagctgttggctagtgttaat
gacgaaatcaccgacaatttattgcagaagttgatcgatgcgggtgttcgcgagatcgat
acactgtatgttaacgatttggatagaggtccttacatctccaattcgatgcgcctggac
accaccacaaatcgcttggaagccttggtggaaatctacagaatgatgcgtcctggtgag
ccgcctaccgtagagtctgcggaaaacctattcgaaaacctgttctttactgacgaacgt
tacgacttatccgccgttggtcggatgaaattcaatcgtcgattggggcgtgaagaaacc
gaaggcccgggcacgctaagcaaagaagacatcatcgatgttctgaaagaactgatcaaa
atcagaaatggtaacggtaccgtggacgatatcgaccatttgggtaacaggcgtgtacga
tctgttggcgaaatgatcgaaaaccagttccgcatcggtttggttagagtcgagcgggct
gtcagagagcgattgaccttggcggattctgagggctatatgccgcaggaaatcatcaac
gctaaacctgtttctgcggcagtcaaggaattctttggttccagccagttgtcgcaattt
atggaccaaaacaatccgttatcgcaagtcacccacaagcgtcgggtttcggcactgggt
cctggcggtttagccagagagcgcgctggattcgaggttcgtgacgttcacaccactcac
tatggtcgagtttgccctatcgaaacaccggagggtccgaacattggtttgattaactca
ttgtcggtctatgccaggaccaatgaatacggcttcctggagacgccttaccggaaagta
gtcgacggtaaagtaaccgatcaggtcgactatatttccgcaattgaagaaggcgaatac
gttatcgcgcagtccagcgtggcggtggacgaaagcggcaaattggttgaaggcttggtg
tcttgccgttacaaagacgaattcaccttggcttcgtccgaaaccgtgcaatatatggac
gtatcgtccaagcagatcgtatccgtggcggcatccatcattccgttcttggagcatgac
gacgcgaaccgggcgttgatgggttcgaacatgcaacgtcaagcggttcccactttgcgt
gcagagaagcctttggtcggtacaggtatggagcgtgtcgtcgcgaaagactcgggtgta
accgtggtagcaactcgtggcggtcgtatcgaagcggttgatgcggggcgtatcgtagta
cgtgcgaatgacgaagagaccgttgcgggtgtgccaggcgtggatatctacaacttgatt
aaatatacccgttctaaccaaaacacctgtatcaaccaaaaaccactggttaaactcggc
gacatagtcagagccggcgatattttggcggacggcccttcgaccgacatcggcgaattg
gccctgggtcaaaacatgttgatagccttcatgccctggaatggctataacttcgaagac
tccattttggtgtctgagcgagtagtaaaggaagatcgttttacgactattcatatcgaa
gaaaaaacctgcgtagctcgcgaaaccaagcacagtccggaagaaattactgcggatatt
ccaaacgttagtgaagaagccttatccaaattggatgaatccgggattgtatacgtcggt
gcggaagtgaagggcggtgacattctagtgggtaaagtgacgccgaaaggtgaaacgcaa
ttaacgccagaagagaaattgctgagagccatcttcggcgaaaaagcagccgatgtgaaa
gacacgtcgctacgtgtgccgggcaatgttcgcggtactgtaatcgatgttcaggttttc
actcgtgatggtgtgaaaaaagacaagcgagctctggaaatcgaagacgcggaaattaag
cgttaccggaaggacttggatgaccagctgaaaatcgtcgagcacgatattttcgctcgg
gtaaaaaccttgttagcgggtaaaaaagccgaaaagggtccgaatggtttgaaaaaaggc
gaagaaattaccgctgattatctggatggcttggtgccttccgagttgttgaaaatccgc
acacaagacgaagatgtcaacgtgcaattggagaccgttgccgagcatgtcgagcagcaa
cgtaaagaattcgacgagcgtttcgagcagaaaaagaaaaaaatcaccatgggcgacgat
ttggcgccgggcgtgttgaaaatggtcaaagtttatttggctgttaaaaaacgtattcag
ccgggcgacaagatggccggccgtcacggtaacaagggggttatctcccaaatcgtgccg
attgaagacatgccgtataccgctgacggtaaccccgtcgacattttgttaaatcctctt
ggcgtaccatcgcggatgaacgttggtcaggtgttggaaacgcatttgggttgggcatct
aaaggcttgggtatcaagatcggtaagatgctggaagctcaagcaaaagtcgcggaaata
cgtggtttcatggagaaaatttacaattgcagcggccgaaaggaagatctgaattcgttt
accgataaagaaattctagagatggcggtcaacttggttgccggtgtaccgatggcgacg
ccggtcttcgacggggcttcggaagaagatattcgtaccatgttgcgtttggccgattta
ccggagcacgggcaaaccgtactgtacgatggcctaacaggcgagccgtttgagcgtgaa
gttactgtgggttacatgtatatgctgaaactgaatcacttggtggacgacaaaatgcat
gcgcgttcgaccggcccttacagtttggtaacgcagcaaccgttgggcggtaaagcgcaa
ttcggtggtcagcgttttggtgagatggaggtctgggccctggaagcttatggcgccgcg
tacacattgcaagaaatgttgacggtcaaatccgatgacgtgacaggcagaaccagaatg
tataaaaacattgtcgatggcaaccattcaatggaagccggcatgccggaatcattcaat
gtcttagtgaaagagattcgttcgctggcagtgaatatcgaaatggaacaagactaa
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