Methanosarcina sp. WH1: MSWH1_1996
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Entry
MSWH1_1996 CDS
T03851
Name
(GenBank) putative exosome complex exonuclease 2
KO
K12589
exosome complex component RRP42
Organism
mef
Methanosarcina sp. WH1
Pathway
mef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSWH1_1996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mef03019
]
MSWH1_1996
Messenger RNA biogenesis [BR:
mef03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSWH1_1996
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSWH1_1996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AKB22267
LinkDB
All DBs
Position
complement(2448033..2448827)
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AA seq
264 aa
AA seq
DB search
MSEIIATLKKDYIYNLMVKGKRQDGRGFKDFRDLKLETNIISKAEGSAKVTLGNTQVLVG
VKLQTGTPFPDSQDEGVIITNLELNPIASPEYEPGPPREDAIEMARVVDRGIRESGAIDI
KKLCITMGESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTVVPNEQHGLGENVPLAMK
EEMPVGITLAKIGSKLMIDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGSAPLTEAELFE
AIDLALEKAAELRELYLKGLAKSE
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaatcatagccacacttaagaaggactatatttacaatctgatggtcaaagga
aagcgccaggacgggcgcgggtttaaagacttcagggatctcaagctcgaaacaaacatt
atttccaaagctgaaggttctgcaaaggttaccctcgggaacacccaggttcttgtaggt
gtgaagcttcagaccggaactccattcccagactctcaggatgaaggagtaattattacc
aaccttgagcttaatccgatagcttctcccgaatatgagccaggccctccaagagaagat
gcaatcgaaatggcaagggttgttgacaggggaatccgggaatcaggcgcaattgatata
aagaagctttgcataacgatgggagaatccgtatggattgtctttatagatgtccatatc
ctgaacaatgacggaaatatcattgatgcatcctgtcttgctgcaattgcagcccttatg
accacagttgtcccgaacgaacagcatggactgggtgagaacgtgccccttgcaatgaaa
gaagaaatgcccgttggcataactcttgctaagatcggttcaaaactgatgattgacccc
tcccttgacgaggaggcagtttgcgaaacaaaactgaccatagtttccagttcggacgga
tctgttgcaggcatgcagaaaatgggttctgcccctcttaccgaggcagagctgttcgag
gcaatagacctggcacttgaaaaggcagccgaactcagggaactttacctgaaagggctt
gcaaaaagtgaataa
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