Methylovirgula sp. HY1: MHY1_00895
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Entry
MHY1_00895 CDS
T11446
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mehy Methylovirgula sp. HY1
Pathway
mehy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mehy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MHY1_00895 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mehy03021
]
MHY1_00895 (rpoB)
03400 DNA repair and recombination proteins [BR:
mehy03400
]
MHY1_00895 (rpoB)
Enzymes [BR:
mehy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MHY1_00895 (rpoB)
Transcription machinery [BR:
mehy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MHY1_00895 (rpoB)
DNA repair and recombination proteins [BR:
mehy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MHY1_00895 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QXX74089
LinkDB
All DBs
Position
complement(938864..943006)
Genome browser
AA seq
1380 aa
AA seq
DB search
MAQSIAQTFSGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVDEPQGGRLEEGLQAV
FKSVFPISDFNSVALLEFVRYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPDTG
AKSVKDIKEQDVYMGDMPFMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKL
LFAARIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVSSLLYALGMDGEEVLRTFYNTLTY
TRDGDGWRLPFDPERMKGMKASIDLVDADSGEVVLEAGKKLTVRAGRQLVEKGLKAIKVQ
DADLYGNYIASDLYDPATGEIFAEAGDEITVKTLPSLIEVGFDELPILDIDHVNVGPYIR
NTLAVDKNNSREDALFDIYRVMRPGEPPTLDTAEAMFHSLFFDSERYDLSAVGRVKMNMR
LDLDAPDTMRTLRKEDIVAVVRALVDLRDGRGEIDDIDHLGNRRVRSVGELMENQYRLGL
LRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKR
RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIE
APYRRVKEGRLTDEVIYLSAMEESKYYVAQANAPVDKNRTLTEDLVVCRHSGDVVMITPD
RVDFMDVSPKQIVSVAAALIPFLENDDANRALMGSNMQRQAVPLIKADAPLVGTGMESVV
ARDSGAAIAARRSGYIDQVDATRIVVRATEETDGGKPGVDIYRLMKFQRSNQSTCINQKP
LVRIGDFVRKGDIIADGPSTELGDLALGRNVLVAFMPWNGYNFEDSILLNERIVKDDVFT
SIHIDDFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQAGDILVGKITP
KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVEKDERAQAIE
REEIERLAKDRDDELAILDRNVYSRLSELLSGKVAVAGPKGFKKETILGKESFESYPRSQ
WWTFAVEDDQLMIEIEAMRKQYDEAKKGLESRFLDKVEKLQRGDELPPGVMKTVKVFVAV
KRKIQPGDKMAGRHGNKGVVSKIVPQEDMPFLADGTPVDIVLNPLGVPSRMNVGQILETH
LGWACAGLGKQVSKAVNAYLKNKDARPLRHELVDIYGAKEEIEALDETTLLEVGENLRRG
VPIATPVFDGAHEPDICEMLERAGLDRSGQVTLFDGRTGDTFDRKVTVGYIYMLKLHHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYESIVRGEDTFESGIPESFNVLVKEMRSLGLNVELKSAIEPPPTNLLPPTAAAAE
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatcaattgcgcaaaccttcagtggccggaagcgcgttcgcaaatttttcggg
catatccgcgaagtcgcggagatgccgaatctgattgaagtccagaaggcctcctatgat
cagttcctgatggtcgacgagccgcaaggcggtcggctcgaggaaggtctgcaggccgtc
ttcaaatcggtcttccccatttccgatttcaacagcgtcgcgctgctcgagttcgttcgc
tatgaattcgagccgccgaaatatgatgtcgacgagtgccgccagcgcggcatgactttc
gccgcgccgctgaaagtcacgctgcgcctcatcgtgttcgatgtcgatccggacacgggc
gcgaaatccgtcaaggacatcaaggaacaagacgtctatatgggcgacatgcccttcatg
acgatgaatggcaccttcatcgtcaatggcacggaacgtgtcatcgtttcgcagatgcac
cggtcgccgggtgtcttcttcgaccacgacaaaggcaagagtcattcctccggcaagctg
ctctttgccgcgcgcatcattccttatcgcggttcctggctcgacattgaattcgacgcc
aaggacatcgtctatgcgcgcatcgaccgccgccgcaaaattccggtgagttcgctactc
tatgctctgggcatggatggcgaagaggttctgcgcactttctataatacgctgacctat
acccgcgacggtgacggctggcggctgcctttcgatcccgaacggatgaagggcatgaag
gcgagcatcgatctcgtcgacgccgatagtggcgaagtcgtgctcgaagcgggcaagaag
ctcaccgtacgtgccggccggcagctcgtcgaaaaggggctgaaggcgatcaaggtccag
gatgccgatctttacggcaattacatcgcttcggatctctatgatccggcgaccggcgag
atctttgccgaagccggcgacgagatcacggtgaagaccttgccgtcgctgatcgaagtg
ggattcgacgaattgccgatcctcgacatcgatcacgtcaatgtcggcccctatatccgc
aacacgctggcggtcgataagaataattcgcgcgaggacgcgctcttcgacatctatcgc
gtgatgcggccgggcgaaccgccgacgctcgatacggcggaggcgatgttccattcgttg
ttcttcgattccgagcgttatgatctctcggccgtcggccgcgtgaaaatgaacatgcgt
ctcgatctcgatgcgccggataccatgcgcaccctgcgcaaggaggacattgtcgcggtc
gtgcgcgcgctcgtcgatttgcgcgatggccgcggcgagatcgacgacatcgatcatctc
ggcaatcggcgtgtccgctcggtcggcgaattgatggaaaatcaatatcgcctcggtctg
ttgcggatggagcgggcgatcaaggagcgcatgtcctcggtcgatatcgatacggtgatg
ccgcaggatctcatcaatgccaagccggcggcggcggcggtgcgcgagttctttggctcg
tcgcaattgtcgcaatttatggaccagaccaatccgctgtccgaaatcacccataagcgg
cgtctgtcggcgctcggcccgggcggactaacgcgcgaacgcgcgggcttcgaagtccgc
gacgtgcatccgacccattatggccgtatctgcccgatcgagacgccggaaggtccgaac
atcggcctcatcaattcgctcgcgactttcgcgcgcgtcaacaaatacggctttatcgaa
gcgccctatcgccgcgtcaaggaaggccgcttgaccgatgaggtcatctatctctcggct
atggaagagagcaaatattacgtcgcccaggccaatgctccggtcgataagaatcgtacc
ctgacggaagatctggtggtctgccggcattccggcgacgtcgtgatgatcacgcctgac
cgcgtcgatttcatggatgtgtcgcccaagcagatcgtctccgtcgccgcggcgctcatc
ccattccttgagaatgacgacgccaaccgcgcgctgatgggttcgaacatgcagcgccag
gcggtgccgctcatcaaggcggatgcgcctctcgtcggcaccggtatggaatctgtcgtg
gcccgggactccggcgcggcgatcgcggcgcggcgcagcggctatatcgatcaggtcgat
gcgacccgtatcgtggtgcgcgccaccgaggaaaccgacggcggcaagcccggcgtcgac
atctatcggctgatgaagttccagcgttcgaaccaatcgacctgcatcaatcagaagccg
ctggtgcggatcggcgatttcgtgcgcaagggcgacatcattgccgacggtccgtcgacg
gaactcggcgatctcgcgctcggccgcaacgtgctcgtcgccttcatgccgtggaacggt
tacaacttcgaagattcgattctcttgaacgagcggatcgtcaaggacgatgtcttcacc
tcgatccatatcgatgatttcgaggtgatggcgcgcgataccaagctcggcccggaagag
atcacgcgcgacattccgaacgtctcggaagaggcgctgaagaatctcgacgaggcgggc
atcgtctatatcggtgcggaagttcaggctggcgatattctcgtcggcaagatcacgccg
aagggcgagagcccgatgacgccggaagaaaagcttttgcgcgcgatcttcggcgaaaag
gcttccgacgtgcgcgatacgtcgctgcgcgtgccgccgggcgtccagggcacgatcgtc
gaagtgcgtgtcttcaaccggcatggcgtcgaaaaggatgagcgcgcccaggcgatcgag
cgcgaggaaatcgagcggctcgctaaggaccgcgacgacgagctcgcgatcctcgaccgc
aacgtctacagccgcctctcggagctgctgagcggcaaggtggcggtcgccggcccgaaa
ggcttcaagaaagagacgatcctcggcaaggagagcttcgaaagctatccgcgctcgcaa
tggtggactttcgcggtcgaagacgatcagctcatgatcgaaatcgaggcgatgcggaag
caatacgacgaggcgaagaaggggctggaaagccgcttcctcgacaaggtcgagaaattg
cagcgtggcgacgagttgccgccgggcgtgatgaagacggtcaaggtcttcgtcgcggtc
aagcgcaagatccagccgggcgacaagatggcgggacgccatggcaacaagggcgtcgtg
tcgaagatcgtgccgcaggaagatatgcctttcctcgccgacggcacgccggtcgatatc
gttctcaatccgctcggcgtgccgagccgaatgaatgtcggccagattctcgaaacgcat
ctcggttgggcttgcgcgggtctcggcaagcaggtgtccaaggcggtcaacgcctatttg
aagaacaaggacgccagaccgctgcggcacgagcttgtcgatatctatggcgccaaggaa
gagatcgaggcgctcgacgagacgaccttgctcgaagtcggcgagaatctgcgccgcggt
gtgcccatcgcgacgccggtcttcgacggcgcgcatgagcccgacatttgcgaaatgctg
gagcgggccggtctcgatcggtccggtcaggtgacgctcttcgacgggcgcacgggcgat
acgttcgatcgtaaggtgacggtcggctacatctatatgttgaagctgcatcatctcgtc
gacgacaagattcatgcgcgttcgattggtccctacagcctcgtcactcagcagccgctc
ggtggtaaggcgcagttcggtggccagcgcttcggcgaaatggaggtctgggcgctcgaa
gcctatggcgccgcctatacgctgcaggaaatgctgacggtgaagtcggacgacgtggcc
ggccgaaccaaagtctatgaatcgatcgtgcgtggagaggatacgtttgaatcgggcatt
cccgagagcttcaacgttctggtgaaggagatgcgctcgctcggtctcaatgttgagctg
aaatcggcgatcgagccaccgccgaccaatctgctgccgccgactgcggcggccgcggaa
tag
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integrated database retrieval system
