Metabacillus elymi: HUW50_09870
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Entry
HUW50_09870 CDS
T06752
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
meku
Metabacillus elymi
Pathway
meku03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meku00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUW50_09870 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meku03021
]
HUW50_09870 (rpoB)
03400 DNA repair and recombination proteins [BR:
meku03400
]
HUW50_09870 (rpoB)
Enzymes [BR:
meku01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUW50_09870 (rpoB)
Transcription machinery [BR:
meku03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUW50_09870 (rpoB)
DNA repair and recombination proteins [BR:
meku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUW50_09870 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QNF27779
UniProt:
A0ABX6S118
LinkDB
All DBs
Position
2087812..2091390
Genome browser
AA seq
1192 aa
AA seq
DB search
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGLREMFQDISPIEDFTG
NLSLEFIDYSLGDPKYSVEESKERDVTYSAPLRVKVRLINKETGEVKDQDVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYFSGKVDKNGKRGFTATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVSVLLRALGFGSDQEIIDLLGENEYLRNTLDKDNTESTEKALLEIYERL
RPGEPPTVDNAKSLLDSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPETG
EIIVEKGTMIDRRTLDRIMPNLESGVGFKKEHPSGGVTDDEITLQSIKIYAPNDPEGEKV
INVLGNAYVEEAVKNITVADILSSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNRF
GFIETPYRRVDPETGKVTSRIDYLTADEEDNYVVAQANARLADDGSFIDTDIVARFRGEN
TVINRDRIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGT
GMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEDVNGQKVKGNLDKYSMLKFIRSNQ
GTCYNQRPIVSEGDEVVKGEILADGPSMEKGELALGRNVMVAFMTWDGYNYEDAIIMSER
LVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGD
LLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGEGIILDVKVFNREDGDE
LPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPVDIMLNPL
GVPSRMNIGQVLELHLGMAARKLGIHVASPVFDGAREEDVWSTLEEAGMARDAKTVLYDG
RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGM
DVKMLSSDEKEIEMRDLDDDEESQQAEGLSINEQVDTVPEAVELEKDTVVKE
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaactagttcagtatggacgacaccgccaacgtagaagttatgcacgcatt
agtgaagtgttagaattaccaaatcttattgaaattcaaacctcttcctatcaatggttt
cttgatgagggcttgagagaaatgtttcaggatatttctcctattgaggatttcactggt
aacctctcgctagaatttattgattatagcttaggagatcctaagtactccgttgaggaa
tcaaaggagcgcgatgttacctattctgcgccattacgtgtaaaggtgcgcttaattaac
aaggaaactggtgaagtaaaagatcaagatgtctttatgggagattttcctctcatgaca
gaaacaggtacatttgtaattaacggggcagagcgcgttatcgtgtctcagttagtccgt
agcccaagtgtatatttcagtggtaaagttgataaaaatggtaaaagaggctttactgcg
actgttattccaaaccgtggagcttggttagagtacgaaacagatgcaaaagatgtagtt
tatgtacgaatcgatcgtacacgtaaattacctgtatcggttttattgcgtgctcttggg
tttggctctgatcaagaaatcatcgacttattgggtgagaatgagtacttacgtaatact
cttgataaagataatacggaaagtactgaaaaagccctgcttgaaatctatgagcgtctt
cgcccgggtgaaccaccaacagttgataacgcgaagagtttattagactcaagatttttt
gatccaaaacgctatgatttagcaaatgttgggcgttacaagattaataaaaagcttcat
attaagaatcgccttttcaatcaacgtttagcagaaacactagttgatccggaaacaggt
gaaatcatagttgaaaaaggaacaatgattgatagaagaacattagatcgaatcatgcca
aaccttgaaagtggtgtaggattcaaaaaagagcacccatctggtggagtgactgacgac
gagataactcttcaatctattaaaatctacgcaccgaatgatcctgaaggtgaaaaggtt
attaatgttttaggaaatgcgtatgtagaagaagctgttaaaaacatcactgttgctgat
attttatcttctattagctatttctttaatctattacatggtgttggtgatacagacgat
atcgatcacctaggaaatcgtagattgcgttcagtcggagaattattacaaaatcaattt
agaattggtttatcaaggatggaacgtgtagttcgtgagagaatgtcaattcaggatacg
aatacaattactccgcaacaattaattaacattcgtcctgttattgcgtctattaaagag
ttctttggtagctcacaattatctcagttcatggatcaaacgaatccattagccgagtta
actcataaacgtcgtttatcagcattaggacctggtggtttaactcgtgaacgtgcagga
tttgaagtgcgtgacgtacattactcacactatggccgtatgtgtccaatcgagactcct
gagggtccgaacatcggtttgattaactcgctgtcatcttatgcaaaagtaaacagattt
gggtttattgaaacaccatatcgtagagttgatccagagacaggaaaagtaacatctcgt
attgactacttaactgctgatgaagaagataattacgttgttgcccaagcaaatgctagg
ttagctgatgatggttcatttattgatactgatatcgttgcacgtttccgtggcgagaat
acagttattaatagagaccgcatagattacatggatgtatcacctaagcaggtagtatct
gctgcaacagcttgtattcctttcttagaaaacgatgactcgaaccgtgcattaatgggt
gcaaacatgcaacgtcaagcagtaccattaatgaatccagaggctccatttgtcggaaca
ggtatggaatatgtatctggtaaagactcaggtgctgcagttatctgtaaacatcctggt
attgttgaacgagtggaagccaaaaatgtttgggttcgccgatatgaggatgtaaatggt
caaaaagttaaaggtaatttagataaatatagtatgttgaagttcattcgttctaaccaa
ggaacttgctacaaccaacgtccaattgttagtgaaggtgatgaagtcgtaaaaggtgaa
atccttgctgatggtccatcgatggaaaaaggtgaactagcattaggaagaaacgttatg
gttgctttcatgacttgggatggatataactatgaagatgcaattatcatgagtgaaaga
cttgtgaaggatgatgtttatacatctattcacattgaagaatacgagtcagaatctcgt
gatacgaagttaggacctgaagaaatcactcgtgatatccctaatgttggggaagatgcg
ttaagaaacttagatgagcgtggaattatccgagttggtgcagaagtaaaagacggtgat
ctacttgttggtaaagttacacctaaaggggtaactgagcttacagcagaagaacgactt
ttacatgcaatcttcggtgaaaaagctcgtgaagtccgtgatacttcattgcgtgtacca
catggtggggaaggaatcatccttgacgttaaggtatttaatcgtgaagatggagatgaa
ttaccaccaggtgtgaatcaattagtccgtgtatatatcgttcaaaagcgtaaaatctct
gaaggagataaaatggctggacgacatggtaacaagggtgttatttcacgtattctccca
gaagaggatatgccttacttaccagatggaacgccggttgatatcatgttaaatccgctt
ggagttccttcacgtatgaatatcggtcaggtactagagctacacttaggaatggctgct
cgtaaattgggtattcatgttgcttctcctgtatttgatggtgcgagggaagaggatgta
tggtcaacgttagaagaagcaggtatggcacgtgatgctaagactgtgctttacgatggt
cgtacaggtgaaccatttgataaccgtgtatcagttggaatcatgtatatgatcaagcta
gctcacatggttgatgataaattacatgctcgttcaactggtccatactcattagttaca
cagcaaccacttggtggtaaagcacaatttggtggtcagcgttttggagagatggaggtt
tgggcacttgaagcttatggtgctgcttatactcttcaagaaattctgactgttaaatca
gatgatgttgttggtcgtgtaaaaacttatgaagcgattgttaaaggtgaaaatgttcca
gaaccaggtgttcctgaatcatttaaagtattaattaaagagcttcaaagtttaggtatg
gatgtaaaaatgctttcaagtgacgaaaaagagatcgaaatgagagaccttgatgatgat
gaagaatcacaacaagcagaaggtctatcaataaatgaacaagtggatacagtgcctgaa
gctgttgagttagaaaaagacacagtagtgaaagaataa
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