KEGG   Candidatus Megaira endosymbiont of Mesostigma viride: LF888_00775
Entry
LF888_00775       CDS       T07589                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
menm  Candidatus Megaira endosymbiont of Mesostigma viride
Pathway
menm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:menm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LF888_00775 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:menm03021]
    LF888_00775 (rpoC)
   03400 DNA repair and recombination proteins [BR:menm03400]
    LF888_00775 (rpoC)
Enzymes [BR:menm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LF888_00775 (rpoC)
Transcription machinery [BR:menm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LF888_00775 (rpoC)
DNA repair and recombination proteins [BR:menm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LF888_00775 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 Apocytochr_F_C RnfC_N DUF6707
Other DBs
NCBI-ProteinID: UCM94242
LinkDB
Position
200216..204361
AA seq 1381 aa
MSTRVNFYGQLSNTQQFDQIKINIASPEQIRSWSFGEVTKPETINYRTFKPEKEGLFCAR
IFGPVKDYECLCGKYKRMKYKGITCEKCGVEVTSSRVRRERMGHIELAAPVAHIWFLKSL
PSRISTLLDIAMKDLEKILYFENYVVVDPGISPLQKGDLLSDDAYIKAQDEYGEDSFVAL
IGAEVVQRLLAELNLEELSIQLQTELRETNSETKKKKLIKRLKLVEDFLHSGNNPEWMII
NVLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLRRLLELKAPDIIIRNEKRML
QEAVDALFDNGRRGKVIKNPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKKIVEAERIEVWDILEEVIRKH
PVLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLE
ARVLMMSTNNILSPANGKPIISADKDVVLGLYYLTLELSGEPGEGMVFADMAEVEFALYE
KIVTLHSKIRFRMEVINSEGKQVENIVETTPGRLILGELIPKNNANIDFRLVNKQMTKKT
ISNAIDSVYRYCGQKATVIFADHLMQLGFKYACQSGISFGMDDMVIPASKGKHIKETSAL
VKEFEQQYSEGLITFGEKFNKVVDAWSACTDKVATDMMEDIAKPASNDSGIYQNTVHKLN
SIHMMAISGARGSAAQIKQLAGMRGLMTKPSGEIIETPIISNFREGLTVREYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQNCIITEYDCGTTDGIEIKTIIDGGEVLMSLADQIL
GRSVTADIYHPVTNKLIISAGDLIDEEKLEKIEASGLDFLKARSVLTCKTDLGICAKCYG
RDLSTGSIVSIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEISSIEASYDSKVKI
IGRNLVVNSEGCQIVMSRACEVLFIDEKGNERARNKVPYGARLMVDDGYMVQKGQKIAEW
DPYTIPIITEKSGKVLFTDMIEGLSVRDVMDDTTGISSKVVIESKQYSRGVDLRPRIQLL
DSSGKKVELSNGMEAKYYLPVNAVLSVTDGYEVAAGDILARIPRESTKTRDITGGLPRVA
ELVEARRPKDHAVIADVEGRIEFGKDYKSKRRIILHPSDGSEPIEYMLPKGKHVVVNEGD
FVKKGDMIIDGNPVLQDILKVMGVEALARYMVQEIQAVYRLQGVKIDDKHIEVVIRQMLQ
KVEITHTGDTTFTIGELVDAAELEDINKKLVKNSGDPACAEPVLQGITKASLQTNSFISA
ASFMETTKVLTEAAVAGKLDKLIGLKENVIVGRLIPAGTGFYMNIAKKEAQSRDKKIIEN
Q
NT seq 4146 nt   +upstreamnt  +downstreamnt
atgtcaacaagagttaatttttacggtcaattaagcaacactcaacaatttgatcaaata
aagataaatattgcaagtccagagcaaataagatcttggtcttttggagaggtaacaaaa
cctgaaaccattaactatcggacttttaaacctgaaaaagaggggttgttttgtgccagg
atttttggtcctgtaaaagattacgaatgtttatgcggtaagtataagcggatgaaatat
aaaggcatcacttgtgaaaaatgtggtgttgaagttacttcttctagggttagaagggag
agaatggggcacattgagcttgcggctcctgttgcacacatatggtttttaaagtccttg
ccatctagaataagcaccttgcttgatattgctatgaaggatctcgaaaagatcctatat
tttgaaaactatgtggttgttgatccaggtatttcgcctctacaaaaaggtgatttactc
agtgatgatgcttacattaaagcgcaagatgagtatggcgaagatagttttgttgcctta
ataggtgcagaggttgtgcagcgtcttcttgctgagcttaaccttgaagaactaagtata
caacttcaaactgagcttagagaaactaattctgaaactaaaaagaaaaaacttattaag
cgtttaaaacttgtcgaagattttctgcattcaggtaacaaccctgaatggatgatcatt
aatgttttaccggttattccaccggaaataagacctcttgtgatgcttgatggtggaaga
tttgctacctcggaccttaatgaattatatagaagagttattaatagaaataaccgcttg
cgtcgattacttgaactaaaagctccagacattattattcgtaacgaaaaaagaatgtta
caagaagcagtagacgctttatttgataatggtcgtcgtggcaaggtaattaaaaaccca
aacaaacgtccattaaaatctttaagcgatatgttaaagggtaaacagggacgctttagg
caaaatttactcggtaaaagggtagactattcaggacgttcggtaattgtggttggccct
gaactgaagttacatcagtgtggtttgccaaagaaaatggcactggaattgttcaaacct
tttatatactctaagctggagctttatgggatagctactaccattaaagctgctaaaaag
attgtagaagctgaaaggatagaggtttgggatatcttagaagaagtaatacgtaaacat
ccggtacttttaaacagagctccaaccttgcatagattagggattcaagcatttgaacca
ttacttattgaaggtaaagctattcagctgcatcctcttgtttgtgcagcatttaatgcg
gactttgatggtgaccagatggcagtgcacataccactttccatagaggctcagcttgaa
gcaagggtactgatgatgtcgacaaataatattttgagccctgctaacggtaagcctatt
atttctgcggataaagacgtcgtacttggcttatattacttaacccttgaactttcagga
gaaccaggggaagggatggtctttgccgatatggctgaagtagagtttgccctttatgaa
aaaatagtaactttacattctaaaattcgttttcggatggaagttattaattctgaagga
aaacaggttgagaatattgttgaaacaacaccaggtaggttaattctgggtgaattaata
cctaaaaataacgcaaatattgatttcaggttagtaaataagcaaatgaccaagaaaaca
atttctaatgctattgactctgtttatcgttattgcggtcagaaagcgacggtaatattt
gccgaccatttaatgcaattaggttttaaatatgcttgtcagtctggtatttcttttggt
atggatgatatggtaattcctgcttcaaaaggtaaacatataaaagagacatcagctttg
gttaaggagtttgaacagcaatattcagaaggtcttattacttttggagaaaaatttaat
aaagtagttgatgcttggtctgcttgtacggataaagttgctaccgatatgatggaggac
attgcaaagcccgcatctaatgatagcggtatatatcaaaatactgtacacaaattgaat
tcaattcatatgatggctatttccggggccagaggatctgccgctcagataaaacagctt
gctggtatgcgtggacttatgacaaaaccttcaggtgaaattattgaaactcctattatt
tcaaattttagagaaggattaactgttagggagtattttaactctacccatggtgctcgt
aaaggtcttgcggatacggctcttaaaactgcaaattcggggtatttaactagaaggctg
gtggacgtagctcaaaattgtattattacagaatatgattgcggtacgacagatggtata
gaaattaaaactattatagatggtggggaagtcttaatgtctctagctgatcagatttta
ggaaggtcagttaccgctgatatttaccatcctgtaacaaacaagcttataatatctgca
ggggatttaattgatgaagaaaaactagaaaaaatagaagcttctggattagatttcctt
aaagctaggtctgttcttacatgtaaaaccgatttaggtatatgtgctaaatgctatggt
cgtgatttatcaactggttcaattgtctctataggtgaggctgtgggagtaattgctgct
cagtccattggagaacctggaactcagcttactatgaggacattccatattggtggtgct
gctactaagggagcagaaatatcctctatagaggcttcttacgattcgaaagtaaaaatt
ataggacgtaatttagttgtgaattcagaaggttgccagatagtaatgagccgtgcatgc
gaagttttatttattgatgaaaagggtaacgagcgtgcaaggaacaaagtgccgtatggg
gcgaggttaatggttgacgatggttatatggtacaaaaagggcagaaaattgctgagtgg
gatccttatactattccgatcattaccgaaaaatccgggaaggttttgtttactgatatg
atagaaggattatcggtcagggacgttatggatgatactaccggaatatcaagtaaagta
gtaattgaatcaaaacaatattccaggggagtggatttacgtccgcgtatacagttactg
gattcgagcggaaaaaaagttgaattatcaaacgggatggaagctaagtattatttaccg
gtgaatgcggtccttagtgttactgacggttatgaggttgctgctggggatattttagct
cgtattcctagagaatccacaaaaacaagggatattaccggtggtcttcctagagttgcc
gaacttgtagaggcaagaagacctaaggatcatgcagtgattgcagacgtagaggggcgt
attgagtttggtaaagattataagtcaaaaagaagaattattttacatccgtctgatggg
tctgagccaattgaatatatgcttcctaaaggaaaacatgtggttgtaaatgagggtgac
tttgtcaaaaaaggagacatgattatcgacggtaatcctgttcttcaggatattttaaaa
gtcatgggggttgaagccctggcaaggtatatggttcaagaaattcaagctgtttataga
ctgcaaggggtaaaaatcgatgataagcatattgaagttgtaattcgccagatgctgcag
aaagtagaaattactcataccggtgatactacatttacaattggagaattggttgatgct
gctgaacttgaggatatcaataagaaacttgtaaaaaatagtggtgatcctgcttgtgca
gagccggtgctgcagggtattactaaagcttcgcttcaaacaaattcttttatatcggct
gcatctttcatggaaacaaccaaagttttgactgaagctgctgttgccggtaaactagat
aaactgattggtttaaaagaaaatgtgatagttggtcggttaatacctgctggtacaggc
ttttatatgaatattgctaaaaaagaagcacagagtcgagataaaaaaattattgaaaat
cagtaa

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