Massilia endophytica: LSQ66_20200
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Entry
LSQ66_20200 CDS
T09693
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
meny
Massilia endophytica
Pathway
meny03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LSQ66_20200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meny03021
]
LSQ66_20200 (rpoC)
03400 DNA repair and recombination proteins [BR:
meny03400
]
LSQ66_20200 (rpoC)
Enzymes [BR:
meny01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LSQ66_20200 (rpoC)
Transcription machinery [BR:
meny03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LSQ66_20200 (rpoC)
DNA repair and recombination proteins [BR:
meny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LSQ66_20200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Myosin_VII_N
PYNP_C
Motif
Other DBs
NCBI-ProteinID:
UGQ46066
LinkDB
All DBs
Position
complement(4411152..4415384)
Genome browser
AA seq
1410 aa
AA seq
DB search
MKALLDLFKQVQTNETFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAYM
GAEGIRELLRSIDIHRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEMQEPVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKGEGMMFPDVSEVIRAYDNK
EVELATRITVRIVENPKDPATGEFVRTVTRYETTVGRAILSEILPKGLPFSVLNRPLKKK
EISRLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPAEKKTLIATAES
EVKQIEQQYASGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEDVVKRDGSKTTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGTLMKAMVEGGEVIEALRDRI
LGRVAGQDVVNPETQETVYEAGTLLDEDMVEEIERMGVDEVKVRTPLTCDTRYGLCAKCY
GRDLGRGLLVNAGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTIR
FTATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGMAVKAGAPLA
TWDPLTRPIITEYAGTVRFENVEEGVTVARQVDEVTGLSTLVVIDAKRRGSLTKTMRPQV
KLLNDDGQEVKIAGTEHAVAIGFQVGALIMVKDGQQVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQITNAGDTDYIVGEQVERSELLEENDKVVALGKLPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARREKEVWEAEE
RNALLQAERAAMSGADVEAIETSSQDNGEA
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccctgctcgatctattcaagcaagtacagacgaacgagacctttgacgcgatc
aagatcggtctcgcttcgcccgagaaaatccgttcctggtcgtacggcgaagtcaagaag
ccggaaaccatcaactaccgtaccttcaagccggaacgggatggcctgttctgcgccaag
atctttggcccgatcaaggactacgaatgcctgtgcggcaaatacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtcacgctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggcctcgccgaccgcccacatctggttcctgaagtccctg
ccgtcccgcctgggcatggtgctggacatgaccctgcgcgatatcgagcgcgtgctgtac
ttcgaagcctacgtggtgaccgatcccggcatgaccccgctgaagaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgcctacatg
ggcgctgaaggcatccgcgaactgctgcgctccatcgacatccaccgcgatgccgagacc
ctgcgcgtggaactgaaggaatcgaagtccgaagcgaagatcaagaagtacgccaagcgc
ctgaaagtgctggaagcgttccagcgttccggcatcaagcccgagtggatgatcatggaa
gtgctgccggtgctgccgccggaactgcgccccctggtcccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgtaacaaccgcctgaag
cgcctgatggagctgcgtgctccggagatcatcacgcgcaacgaaaagcgcatgctgcag
gaagcggtggactcgctgctggacaacggccgccgcggcaaggccatgacgggcgccaac
aagcgtccgctgaagtccctggctgaaatgatcaagggcaagggcggccgcttccgccag
aacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggcccgcag
ctcaagctgcaccagtgcggcctgccgaagctgatggccctggaactgttcaagcccttc
atcttcaacaagctggaactgatgggtctcgcgaccaccatcaaggccgccaagaagctg
gtggaaatgcaggagccggtggtctgggacatcctggaagacgtgatccgcgaacacccg
atcatgctgaaccgtgcaccgaccctgcaccgtctgggcatccaggccttcgagcctgtg
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggccttcaacgccgac
ttcgacggcgaccagatggccgttcacgtgccgctgtcgatcgaagcgcagatggaagcg
cgcaccctgatgctggcttcgaacaacatcctgttcccgtccaacggcgaaccgtcgatc
gtgccgtcccaggatatcgtgctgggcctgtactacgcgacccgcgaggcgatcaacgcc
aagggcgaaggcatgatgttcccggacgtgtccgaagtcatccgcgcctacgacaacaag
gaagtggaactggcgacccgcatcaccgtgcgtatcgtcgagaatccgaaggacccggcc
accggcgagttcgtgcgcaccgtcacgcgctatgaaaccaccgtcggccgcgcgatcctg
tccgagatcctgccgaaaggcctgccgttcagcgtgctgaaccgtccgctgaagaagaaa
gagatctcgcgcctgatcaacacctccttccgcaagtgcggcctgcgcgccaccgtggtg
ttcgccgaccagctgatgcagtccggcttccgcctggcgacccgcgccggtatctccatc
tgcgtggacgacatgctggtgccggccgagaagaagaccctgatcgcgaccgccgaatcc
gaagtcaagcagatcgagcagcagtacgcttccggtctggtgacggcgggcgagcgttac
aacaaggtggtggacatctggggcaagacctccgacgaagtcggcaaggccatgatggac
cagctgaaggtggaagacgtcgtcaagcgcgacggcagcaagaccacccaggaatccttc
aacgcgatttacatgatggccgactcgggcgcccgcggttccgcggcccagatccgccag
ctggccggtatgcgaggcctgatggccaagccggacggctccatcattgaaacgccgatt
accgcgaacttccgcgaaggcctgaacgttctgcagtacttcatctcgacgcacggcgcc
cgtaagggtctggccgacaccgcgctgaagaccgcgaactccggttacctgacccgccgc
ctggtggacgtgacccaggacctggtggtgatcgaggacgattgcggcacctccaacggc
acgctgatgaaggcgatggtcgaaggcggtgaagtgatcgaagccctgcgcgaccgtatc
ctcggccgcgtggctggccaggacgtggtcaatcctgaaacccaggaaaccgtgtacgaa
gccggcacgctgctggacgaggacatggtggaagagatcgagcgcatgggcgtggacgaa
gtcaaggtccgcaccccgctgacctgcgacacccgctacggcctgtgcgccaagtgctac
ggccgcgacctgggccgcggcctgctggtcaacgccggcgaagcagtgggcgtggtggcg
gcgcagtccatcggcgagccgggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcatcgcgcgctgcggtggcatcgtcggtggaagccaagtcgaacggcaccatccgc
ttcaccgcgaccatgcgctacgtcaccaacggcaagggcgcccagatcgtcatttcccgt
tccggcgaagtgctgatcacggacgaccacggccgcgagcgcgagcgccacaaggtgcct
tacggcgcgaccctgatcgtgaaggacggcatggcagtgaaagcaggcgcgccgctggcg
acctgggacccgctgacccgtccgatcatcaccgagtacgccggtacggtgcgtttcgag
aacgtcgaagaaggcgtgaccgttgcccgccaggtggacgaagtgaccggcctgtcgacc
ctcgtggtgatcgacgcgaaacgccgcggctcgctgaccaagaccatgcgcccgcaggtg
aaactgctgaacgacgacggccaggaagtgaagatcgccggcaccgaacacgctgtggcc
attggcttccaggtgggcgcgctgatcatggtgaaggacggccagcaagtgtccgtgggt
gaggttctggcgcgtatcccgaccgaatcgcagaagacccgcgacattaccggcggtctg
ccgcgcgtggccgaactgttcgaagcacgttcgccgaaagacgcgggcatgctggcggaa
gtcaccggtacggtggccttcggcaaggagaccaagggcaagcagcgcctggaaatcacc
gacatggacggcaacaagcacgagttcctgatcacgaaggacaagcaggtgctggtgcac
gatggccaggtggtgaacaagggcgagatgatcgtggacggcccggccgatcctcaggac
atcctgcgcctgctgggcatcgaagcgctggcccgctacatcgtggacgaagtgcaggac
gtgtaccgtctgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccag
atgctgcgccgtgttcagatcaccaatgccggcgacaccgactacatcgtcggcgagcag
gtggagcgttccgagctgctggaagagaacgacaaggttgtcgcgctgggcaagctgcca
gcgacctacgagaacgtcctgctgggcatcaccaaggcctcgctgtcgaccgactccttc
atctccgcggcctcgttccaggaaacgacccgcgtgctgacggaagcggcgattatgggc
aagcgcgacggtctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgatccctggc
ggtaccggcctggccttccaccgcgcccgccgcgagaaggaagtgtgggaagccgaagag
cgcaacgccctgctgcaagccgagcgcgcagccatgagcggtgcggatgtcgaagcgatc
gaaacctcctcgcaggacaacggcgaagcgtaa
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integrated database retrieval system
