Manihot esculenta (cassava): 110599798
Help
Entry
110599798 CDS
T05761
Name
(RefSeq) DNA repair protein RAD4 isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
110599798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110599798
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
110599798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
110599798
NCBI-ProteinID:
XP_021592062
LinkDB
All DBs
Position
1:complement(31485973..31496350)
Genome browser
AA seq
881 aa
AA seq
DB search
MGAERESLTDFSRESVDKVVRRVNARGSSGTKGNGKQVVVDTGVTWSDLDGGNFRDSLRN
NDDEIDDIDWEDGSNSLLDSASNHHLGDDSTRTVTIEFSESLDFAKRKPVRRATSEEKEL
AEIVHKVHLLCLLARGRLVDSACDDPLIQASLLSLLPSHLLKVSGVPKLSANALSPLVSW
FHNNFHVRSCASEKRSFQKALAFALETREGTPDEITALFVALFRALKLTTRFVSILDVAS
LKPSVDRCESSSQDKSRVHSGIFNNSTLMVNRQREFITPPVESFSYNEKNNMCETSSKLP
WKSKISYPRGEQTCSKDPPDTIELKNQTTDTFSCEAQDRVSESCSSPKCQGSKRKGDLEF
EMQIQMAMFATGITTPQSSMRSDVRSSTSDSSKIASPLKRIKTIASEGSPSHGISTAVGS
QKIGSPLYWAEVYCSGENLTGKWVHVDVVNAIIDGEQKVEAAAAACKTSLRYVVAFAGHG
AKDVTRRYCMKWYKIAPQRVNSDWWDEVLAPLRGLESGATGGPEVAERNIDIESSERNSS
VATRNSLEDVELETRALTEPLPTNQLAYKNHQLYAIERWLTRCQILHPRGPTLGFCSGHP
VYPRACVQTLKTKERWLREGLQVKSSELPAKVLRQSGKLKKVKLLEDDDYDGAEPRGTIE
LYGKWQLEPLQLPHAVNGIVPKNERGQVDVWSEKCVPPGTVHLRLPRVFHVAKKLEIDYA
PAMVGFEFKNGRSFPVFEGIVVCAEFKDAILEAYAEEEERRETEEKKRYEAQAISRWYQL
LSSGITRQRLQNCYANSSLQMSSNIQDKNYKSDVHDSNQPRKQSRGCQKEDAQNTVSEVP
PVDQTEDHEHVFLVEEERFDEEISVKTKRCHCGFSVQVEEL
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcagagagagaaagtctgactgatttttcgagggagtcagtagacaaagttgtg
agacgtgttaatgcgcgtggatcatcaggaacaaaaggaaatggcaagcaagtcgttgtg
gatacaggggttacgtggagtgatttggatgggggaaatttcagggattctctgaggaac
aacgatgacgaaatagatgatatagattgggaagatgggtctaattcgcttttggattct
gcaagcaatcatcatttgggtgatgatagcactaggacggtgactattgaatttagtgag
tctcttgattttgctaagcggaagcctgttcgtcgtgctacatctgaagaaaaggaattg
gcggagattgtccataaggttcacttgctttgtttacttgctaggggcagattagttgac
agtgcttgtgatgatcctcttattcaggcctctttactctctctcctaccatcacacttg
ttgaaggtatcgggggtcccaaaactttctgctaatgctttgtctccccttgttagctgg
tttcataataactttcatgttagaagctgtgccagtgagaagagatcatttcagaaagct
ttggcctttgcacttgaaactcgtgagggaactccagacgagattactgctttgtttgtg
gcgctattcagagctttgaagcttacaactcggtttgtgtccattctagatgttgcctcc
ttaaaaccgagtgttgatagatgtgaatcctcaagtcaagataaaagcagagtgcacagt
gggatattcaataattcaacgttgatggtaaatagacaaagagagtttatcactccacct
gttgaatcattctcttacaatgaaaaaaacaatatgtgtgaaacttcttcaaagcttcct
tggaaaagtaaaattagctatccaaggggtgagcaaacttgttctaaggatccccctgac
acaattgaattgaaaaatcaaacaacagatacattttcgtgtgaggctcaggatagggtc
tctgaatcatgctctagcccaaaatgtcagggttcaaagaggaagggtgatcttgagttt
gaaatgcagattcaaatggccatgttcgcaacaggaattacaactcctcagagtagcatg
agatcagatgtgagaagctcgaccagtgattcatcaaagattgcttctccacttaaaaga
attaaaacaattgcaagtgaaggatctccctcccatggaatctcaactgcagttggatca
caaaaaataggatctcctctgtattgggcagaagtatactgcagtggagagaatttgaca
ggaaagtgggtgcatgtagatgtggtaaatgctattatagatggagaacagaaggttgaa
gctgcagctgctgcatgtaaaacatctttgagatacgtggttgcttttgctgggcatggt
gccaaagatgtaacccgcagatactgtatgaagtggtacaagatagcgccacaacgtgtt
aactcagattggtgggacgaagtgttggccccattgagggggctagagtctggagcaact
ggagggcctgaagtagctgagaggaacattgatatagaatcttctgagaggaattcttct
gttgctactagaaactctcttgaggatgtggagttggaaactagggcactaactgagcct
ctgcccactaatcagctggcctataaaaatcatcaactttatgctattgaaaggtggctt
acaaggtgccagatactgcatcccagaggtcccactctgggtttttgttctggacatcca
gtttacccccgtgcttgtgtgcaaacgctcaaaacaaaagaaagatggttgcgtgaaggg
ctgcaggttaaatccagcgaacttccagcaaaggtgttgagacaatctggaaagcttaag
aaagtaaaacttttagaagatgatgattatgatggggccgagcctagaggaactattgaa
ctttatgggaaatggcaactagaacccttgcagctcccacatgctgtaaatgggattgtg
ccaaagaatgagcgtggtcaagttgacgtgtggtctgagaagtgtgtgccacctgggaca
gtgcacttgcgacttccaagggtatttcatgttgctaagaaattggaaattgactatgca
cctgccatggttggttttgaattcaaaaatggccgatcttttcctgtctttgagggcatt
gtggtgtgtgctgagttcaaggatgccattttagaggcttatgctgaagaagaagagaga
agagagaccgaagaaaagaaaagatatgaagcacaagctatctctaggtggtatcaactt
ctttcgtctggcataactcgacaaaggttacaaaactgttatgcaaacagttcgttgcaa
atgtcaagcaacatccaagataaaaattacaaatcagatgtacatgatagtaatcaacct
cgaaagcaatcccggggatgccaaaaagaagacgcacagaatactgtatctgaagttcct
ccagtagatcaaactgaagatcatgagcatgtatttttggtagaagaagagagatttgat
gaggagatttcagtgaagacgaagcggtgtcactgtggattttcggtccaagtggaggaa
ttatag
DBGET
integrated database retrieval system
