Manihot esculenta (cassava): 110600946
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Entry
110600946 CDS
T05761
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110600946
03041 Spliceosome [BR:
mesc03041
]
110600946
03036 Chromosome and associated proteins [BR:
mesc03036
]
110600946
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110600946
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110600946
mRNA cycle factors
Common to processing body (P body) and stress granule
110600946
Spliceosome [BR:
mesc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110600946
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110600946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF6111
Motif
Other DBs
NCBI-GeneID:
110600946
NCBI-ProteinID:
XP_021593594
LinkDB
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Position
15:complement(8440504..8450372)
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AA seq
611 aa
AA seq
DB search
MSTRTSWADLAANSAAENTVAGSSANNGSVGTTSAAPPRSTYVPPHLRNRMPSSDPPAPA
YSGPATSNDRPGYGGSRWGAPRNDYRGGRSGGWGNRSGGWVRGREPEVNPFADDDDTEEA
FTEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRH
AIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMKMQGQSAQRPPRGARAVYPLALILSP
TRELSMQIHEEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDIIVATPGRLVDLLERA
RVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQNDMPRPGARQTMLFSATFPREIQRLAS
DFLYNYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQRANGVQGRQALTLVFV
ETKKGADSLEHWLCVNGFPATSIHGDRTQQEREQALRSFRSGNTPILVATDVAARGLDIP
HVAHVVNFDFPNDIDDYVHRIGRTGRAGKTGLATAFFNEGNASLARSLADLMQESNQEVP
AWLSRYAARSSYGGGRNRRSGGGRFGGRDFRRDSSFSRGSSDYYGGANTSSGHGASGGYG
GYGSGMTSAWD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgagtactcgaacttcatgggccgatttggctgcaaattctgcagctgagaacacagtg
gcaggttcttctgctaacaatggaagtgtaggcacaacttctgcagctcctcctcgatcc
acctatgtccctccacacctccgtaatcgtatgccctcttcggacccaccagctccagct
tacagtgggcctgcaacaagtaatgatcgtccgggatatggtggatcccgttggggggct
cccagaaatgactatagaggtggtagaagtggtggttggggaaacagaagtggtggttgg
gttcgtgggagggagccggaggtgaacccattcgctgatgatgacgacacagaggaggca
tttactgagcaagagaacactggtattaactttgatgcatatgaggatattccagtcgag
acaagtggggaaaatgtccctccacctgtaaacacctttgcagagattgacttgggtgaa
gcattgaatcagaacatccgcaggtgcaagtatgtgaaaccaacacctgttcaacgacat
gccatcccaatctctcttggaggccgggatctgatggcatgtgctcagactggttctggc
aagactgcagctttctgtttcccaattattagtggaattatgaaaatgcaagggcagagt
gcacagaggccaccgcgtggtgcacgtgcagtgtaccctttagctcttattctttctcca
acaagggagctctcgatgcagatacatgaggaagcaaggaaattctcctatcaaacaggt
gttaaggtagttgttgcttatggaggagcaccaattaatcaacagctgcgtgaactggag
agaggtgttgatattattgtagcaaccccaggaagactggtagatttgttggagagagct
agagtttcgttacagatggtcaagtatttggccctagatgaagcagatagaatgttggat
atgggttttgagccacaaataagaaaaattgtggagcaaaatgatatgcctcgaccaggt
gcaagacaaacgatgttgttcagtgctacctttccaagggagatacagagactagcttct
gatttcttgtacaattatatctttttggctgttggacgagtgggctcaagtactgattta
attgtccaaagagttgaatttgttcatgagtctgacaaaagaagtcaccttatggacctt
cttcatgcacaaagggcaaatggtgttcagggcaggcaagctttaacattagtttttgtg
gagacaaagaagggtgctgattcacttgaacattggttatgcgttaatggattccctgct
actagtatacatggcgatagaacacaacaggaaagagaacaggcattgcgatcatttaga
agtggtaacaccccaatcttggtagcaactgatgttgcagctcgtggacttgatatccct
catgtggcacatgtagtcaactttgatttcccaaatgatattgatgattatgtccatcgg
attggacgaacaggacgagcagggaaaactggtcttgcaactgccttcttcaatgagggt
aatgcatcattggcaaggtctctagctgatttaatgcaagaatcaaaccaagaagtacct
gcttggctctctcgttatgcagctcgttcttcttatggtggaggaaggaaccgtcgttct
ggaggaggcagatttggtggccgtgattttcgaagggattcttcattcagcagaggcagt
tcagattattatggtggagcaaacaccagcagtggacatggggcttctggtggatatgga
ggatatggttcagggatgaccagtgcatgggattaa
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