Manihot esculenta (cassava): 110606404
Help
Entry
110606404 CDS
T05761
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110606404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110606404
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
110606404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_14
TPR_16
TPR_8
TPR_9
TPR_19
TPR_CcmH_CycH
TPR_12
TPR_7
TPR_15
NatA_aux_su
BTAD
TPR_P4H
Y2_Tnp
Motif
Other DBs
NCBI-GeneID:
110606404
NCBI-ProteinID:
XP_021600887
LinkDB
All DBs
Position
18:275112..307387
Genome browser
AA seq
1190 aa
AA seq
DB search
MIAALFQQEKEEDEEFRAQLTHLEESVEDHPEDPSLRFNLGLLLWEKGGQFKEFKEKAAE
HFVISAKLNPHNAAAFAYLGHYYSRFTADSQRALKCYERAITLNPDDSESGESLCDMLDH
SGKETLEQAVCGEASEKSPRAFWAFRRLGYLHLHHRRWSEAVQSLQHAIRGYPTCADLWE
ALGLAYQRLGMFTAATKSYGRAIELDDTRVFALVESGNIFLMIGSFRKGVEQFQRALEIS
PQNVSANYGLASGLLGLSKECMNLGAFKWGASLLEDAGKVAEVNGQLAGNVSCIWKLHGD
IQLTYAKCFPWTKGDHSAEFDVDTFEASIFSWKQTCHLAAMSAKRSYQRALHLVPWQANL
YIDIGITLDLISSMNENYGLDLYPWQLSEKMALGGLSLEGDNYEFWLALGCLSGHNAMKQ
HALIRGLQLDVSSAVAWSYLGKLYREEDEKKLARQAFDCARSVDPSLALPWAGMAADANA
REPTTDEAFESCLRAVQIFPLAEFQVGLAKLALLSGNLASSQVLGAIQQAVLRGPQYPES
HHLKGLVCEARSEYEAAVASYKLARCAINISPGTASNAHLRDIAVNLARSLCRAGYAADA
VEECKYLRKEGVLDAEGIQIYAFSLWQLGKCDLALSLARDLVSSASSLEKTSAAVSVSFF
CRLLYYISGLDSAISSILKMPRELFENSKFSFILSTIHALDQSNRLESVVSTSRYFIVSH
EDVTGMHCLIALSKLVKHGSDSCLGYQDGISYLKKALHKYPNSKLMRNLLSHLLLSTEEG
EHTHVASRCCIIDSSYYGSKVGLKSGWELLGAGSVACYAIGNKDPKFSFPTCGYQCMKGP
GAIRELQKYLRQEPWNHNARYLLILNILQKAREERFPRQLCVILKKLLSVALSNELYSRE
SFSYQYQKFQLLLCLSEISLQCGNQSDCIEHARRSVSLCIPNNYRFFGHLLLCRAYAVEE
NFVNLQEEYIRCLEIKTDYHIGLICLKIMESQYYIETDSNISELSFKDCLKEWKNSWNMW
AAVFNLVLGLISIWNEDFLSAEAFLSQACLLAGTDSCLFLCHGAICMELAKMSSSYQILS
FAIRSLTKANTNSIIPLPIVSLLMAQAEGSLGSKQKWERNLRLEWYSWPPEMRPAELFFQ
MHLLARRSEVQIDSSSNVEFCQSPLKWILRSIHTNPSCLRYWKVLQKITE
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcggctctgtttcagcaggagaaagaagaagacgaagaattcagagctcagttg
acgcacttggaggagtctgtggaagaccatcctgaagacccctctctacgttttaatctc
ggactcctactgtgggagaaaggaggtcagttcaaggaattcaaggaaaaagccgccgaa
cattttgttatttcggccaaattgaatcctcacaatgcagctgctttcgcatatttgggc
cattactattctcgctttaccgctgattctcagagggctcttaagtgttacgagagggct
atcacccttaaccctgatgattctgagtctggggaatccctctgtgatatgttggaccat
tctggaaaggagaccttggagcaggcagtgtgtggggaagcctcagaaaagtcacccagg
gccttttgggctttccgtagattgggttacctccatctccaccaccgcagatggtcggag
gccgttcagagccttcaacacgcaattcgaggttatccgacctgtgctgatttatgggaa
gctctgggtctagcctaccagcgacttggcatgtttactgctgctactaagtcctacggg
cgggccattgagttggatgataccagagtctttgctttggttgaaagtggaaatatcttc
ttgatgattggttccttcagaaagggagttgagcagtttcagcgtgcactcgagatttca
cctcaaaatgtgtctgcaaactatgggcttgcttctggactccttggtttgtcaaaggaa
tgtatgaatttgggtgcattcaaatggggagcatcattattagaggatgcagggaaagtt
gcagaagtaaatggtcagttggctggaaatgtttcttgtatctggaagttgcatggtgac
atccaactcacctatgcaaaatgttttccctggacgaaaggggaccatagtgcagaattt
gatgtggacacttttgaagcttccatcttttcctggaagcaaacctgtcatttggctgct
atgtctgcaaaaaggtcttatcaacgggctctgcatttggtcccatggcaagctaacctc
tatattgatattggaataacattggatctcatttcttctatgaatgaaaattatgggctt
gacttgtatccttggcagctatcagagaagatggctttggggggattgtcacttgagggt
gacaattatgagttctggctggcactagggtgtttatctggacataatgcaatgaaacag
catgctttgatcaggggattgcaactggatgtatcatcagctgttgcttggtcatatctg
gggaagctttatagagaagaagatgagaagaagttggcaagacaagcatttgattgtgct
agaagtgtagatccctcacttgcactgccgtgggcaggaatggccgctgatgctaatgct
agggagcccacaacagacgaggcttttgagagctgcttacgagctgtgcaaatatttcct
cttgcggaattccaagttggtctggctaagcttgctttgctttcggggaaccttgcatct
tcacaggtacttggagctatccagcaggcagtcctgcgtggccctcagtatcctgaatct
catcatttgaaagggctagtttgtgaggcacggtctgagtatgaagctgctgttgcttca
tataagctagcacgctgtgcaatcaacatttcaccaggcactgcttcaaatgctcacctc
cgggatatagcagttaacttggcccgatctctttgtagggcagggtatgctgcagatgct
gttgaagaatgcaaatacttgaggaaagaaggtgtccttgatgcggaaggcatacagata
tatgctttctcactatggcaacttggtaagtgcgatcttgccctctcgttggcaagggat
ctggtttccagtgccagttcattggagaaaacatctgcagccgtttctgtcagtttcttc
tgcagattgctttattacatttctggactagattcagcaatttctagcattttgaaaatg
ccaagggaactgtttgagaactcaaaattcagctttatactgtctactatacatgctctt
gaccagagtaataggcttgaatcagttgtttcaaccagtcgttacttcattgtatctcat
gaagatgtcactggaatgcattgcttaatagcacttagtaaattggtgaagcatggatca
gattcttgccttggatatcaggatggaattagttaccttaagaaagcccttcacaagtac
cccaacagtaaattaatgaggaacttgctcagtcaccttttgctatccaccgaggaaggg
gaacatactcatgtagcaagtaggtgctgcattatagattcctcctactatggcagtaaa
gtaggtctaaagtctgggtgggagctccttggtgccggttcagttgcttgctatgcaatt
ggcaataaagatccaaagttctctttcccaacatgtggttatcaatgtatgaaaggacct
ggagccattcgagaactccagaagtacttgcgtcaggaaccatggaatcataacgcacga
tatttgctaatacttaatattttacagaaggcacgtgaagagagatttcctcggcaactt
tgtgtcatactcaagaaactactttctgtggcactttccaatgagctatattctagagaa
agcttttcatatcaatatcaaaagtttcagcttctgctatgtctttctgaaattagtttg
caatgtgggaatcaatctgactgtattgagcatgctagacgttctgtgtccctttgtatc
cctaataactaccgtttttttgggcatttactgttatgtcgagcctatgctgttgaagaa
aactttgtaaatcttcaggaagagtatattagatgcctggagatcaagacagattatcat
ataggattgatatgtcttaagatcatggaatcccaatactacattgaaactgattcaaat
atctcagagctgagtttcaaggattgtttaaaggaatggaagaattcatggaatatgtgg
gcggctgtatttaatttggttttgggtttaatatccatatggaatgaggattttttatct
gctgaagcatttctttcgcaagcttgtttgctggcgggcactgacagctgtctttttctc
tgtcatggtgccatctgtatggagcttgccaaaatgtcaagtagctaccaaattttatca
tttgctataaggagtcttaccaaagctaatacaaattctatcattccattgcctattgtg
tctttattgatggcacaagcagaagggagccttggctctaagcagaaatgggagaggaat
cttcgccttgaatggtattcttggccaccagaaatgaggcctgcagaactgttctttcaa
atgcatttgcttgcacgtcgatcagaagtgcaaattgactcttcatccaatgtggaattt
tgtcaaagcccgctgaaatggattctacggtctattcatacaaatccatcttgtttgaga
tattggaaggttttacagaagattacagaatga
DBGET
integrated database retrieval system
