Manihot esculenta (cassava): 110615750
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Entry
110615750 CDS
T05761
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110615750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110615750
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110615750
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110615750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
110615750
NCBI-ProteinID:
XP_043812915
LinkDB
All DBs
Position
5:complement(4162087..4184933)
Genome browser
AA seq
2424 aa
AA seq
DB search
MSKLSSTVPNQIRFLLQSLNEANVDSVFRELCQFIEYGVEGSVLVLQTCLEQLHFNRTDL
KGMQLEPVFVSIFKFLLDKPNFSTVFCQSLRSLEINDEFLENLSNVLHLSLSEKISIGLA
LSDSEIVESRMSAKKFCMAQIEELCENPVSLNSAEQIQNIVMFLQRSGGLSKHIDHLLQI
LSSVQPKESFPFVLTPLLSDEMREANFLRNLDMYHECKESEFDALLAELEKERSAGDIVK
ELGYGCTFDVSHCKEILSHFLPLTESTISKILGTIASNPTGLEDNQSTFSNFGIALGCSI
YPDLPQLSSWDIDILVKTIKQLAPGTNWIQVMENMDHEGFYIPSEEAFSFFMSVYRHACQ
DLFPLHAICGSLWKNTQGQLSFLKYAVLAPPEVFTFGHSGRQLVYNDAVHGHKLHPGHSN
HAWFCLDLLDVLCQLAEMGHSSSIRSMLEYPLKHCPEILLLGMSHINTSYNLLQYEVSIK
VFPMLIKSSAGSGMILYLWHVNPSLVLRGFVDSHNIEPDCMTKILDICQELKILSSVLDM
IPSPSGIRLAAVASRKELIDLEKWLTTNLVTYKDFFFEECFKFLKEVQHGGSQDFSTKPF
HHTSSITNVYLETCSTFLKVLKAHTSLTISSRLSEEMEKLNLTIMDSNPRLQNGASVDSS
ASEGFSDDVEAEANSYFHQMFSSQLTIDAMVQMLARFKESPVRREQLIFECMIGNLFEEY
RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRGTHSELVSFIERALARISSGHLESDGSNNPSAANHHG
LSQAGSGNGELNSVNVTQPVQQLSSALHVQRHETPLDDRHKISVVSSNDTKSHLSAGGHS
SVAPLGDISSIQKNVASTSSILSSSHGFIRPSRGTTSARFGSALNIETLVAAAERRETPI
EAPASEIQDKISFIINNISAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDL
YLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQ
VLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLAEIY
SMPNLKMNLKFDIEVLFKNLGVDLKDITPTSLLKDRKREIEGNPDFSNKDAGASQPQIVA
DVKSGMISPLNHAELPLEVANPPSSGGHTHLLSQYAAPVHLPSGTLMEDEKLAALGLSDQ
LPSAQGLFQATPSQSPFSVSQLPTAMPNIGTHVIINPKLNSWGLHLHFQRVVPIVMDRAI
KEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPL
RTSISTQLRNSLQGLSVASELLEHAVQLATNDNLDLGCAIIEQAATDKAIQTIDGEISQQ
LSLRRKHRDGVGPTFFDASMYTQGSMGVVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQS
SQSSHSVPTGSSSSSGASGLANTFGSASGSGQLNAGYSSPPGNLGFEAVSRTVEMASDSV
ESNSAALLSASSIHIGASDGVIQQNSENNSISASFSSAAAAPEPQLGDSSDAVKESIISP
QPISSSAASDRLGSGISEPSLNTRDALDKYQIVAQKLEALINSDAREVEIQGVIAEVPEI
ILRCISRDEAALAVAQKVFKGLYENASNNFHVNACLAILAAIRDVCKLVVKELTSWVIYS
DEERKFNKDITLGLIHSELLNLAEYNVHMAKLIDGGRNKGATEFAISLVQTLVMEESKVI
SELHNLVDALAKLAAKPGSPESLQQLIEIVRNPVANSAVFSGFTVGKEDKTRQSRDKKAV
SQSVSNREDYGNAESVEPDPVGLHEQVTMLFAEWYRICELPGANDAACTHYILQLHQNGL
LKGDDMTDCFFRILTELSVAHCLSSEVITSATLQSTQQGQTLSFLAIDIYAKLVFSILKV
EQGSSRFFLLSKILAVTVRFIQKDSEEKKTSFNPRPYFRLIVNWLMDLISPDPVIDGANF
QILTAFAGAFHNLQPLKVPAFSFAWLELVSHRSFMPKLLTGNAQKGWPYVQRLLVDLFQF
LEPFLRSAELGMPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILS
AFPRNMRLPDPSTPNLKIDLLPEIREAPHILSEVDAVLKAKQMKADVDEYLKMATLQTRQ
QGSSFLTELKQRLLLSPSEATSAGTRYNVPLINSLVLYAGMQAIQQLQARTPHAQSTGNT
SALAVLLVDAALNIYQTLILELDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFAESN
QEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESV
ARSCGGLKPMDESMVSSWVSEGTH
NT seq
7275 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagttgtcatcaaccgttccgaatcagattcgcttcttgctccagagtttgaac
gaagccaatgtcgattctgttttccgagagctatgccagtttattgaatatggagttgag
ggaagtgttctggtgctccaaacatgcttggaacagctgcattttaacaggacagacttg
aaaggcatgcagctggaaccagttttcgtgtccattttcaaatttcttttggacaaacca
aatttcagtactgtgttttgccagtcattaagaagcttggagataaatgatgaattccta
gagaatttgtctaatgtgttacatttatctctgtctgaaaaaattagcattggtcttgct
ctgtctgattctgagattgttgaatccagaatgagtgcaaagaaattttgcatggctcag
attgaggaactgtgtgaaaatccagtttctctgaattcagcagagcaaattcagaatatt
gttatgtttcttcagcggtcagggggcctctccaagcacatagaccaccttttgcagata
ttatcctcggtgcaaccaaaagagtcttttccatttgttttaactccactgctttcagat
gaaatgcgagaggctaatttcctgaggaatttggatatgtaccatgaatgcaaggaaagc
gagtttgatgctttattagctgaattggagaaggagagaagtgcaggtgatattgtgaag
gaattaggctatggatgcacatttgatgtctcacactgcaaagagattttgtctcacttc
ttaccactgaccgagagtaccatctcaaagatacttggaactattgcaagcaaccctact
ggcctagaagacaaccaaagcacattttcaaactttggtatagctcttggatgtagcatt
taccctgatctcccacagttaagttcctgggatattgacatcctcgtgaaaactatcaag
caacttgctcctggtactaattggatacaagtgatggaaaatatggatcacgagggattt
tatatccctagtgaggaagcattctctttcttcatgtctgtatatagacatgcttgccag
gatctattccctctccatgctatttgtggatccctgtggaagaatactcagggtcaacta
tcatttctcaaatatgctgtattggcccctccagaagtgtttacctttggtcattctgga
agacagctggtatataatgacgcagtacatggtcataagcttcatcctggacattcaaat
catgcatggttctgtttggaccttttggatgtgctttgtcaactagctgagatgggtcat
tcaagttctattcggtcaatgctcgaatatcctctcaagcactgtccagaaatcttactt
cttggaatgtcacatatcaatacttcgtataaccttctccaatatgaagtatctattaaa
gttttccctatgttaatcaaaagctccgcaggtagcggtatgattctttacctctggcat
gtaaaccctagtcttgttttgcggggatttgtagattctcacaacattgaaccagattgc
atgaccaagatattggacatatgccaagaattgaagattctgtcatcagtattagacatg
attccttctccttctggcatcagattggcagccgtagcttcacggaaagaactcattgac
cttgaaaagtggctgactactaatttagttacatataaagattttttctttgaggaatgt
ttcaagtttttgaaggaggtccaacacggtggatcacaggatttttctaccaaacctttc
catcatactagctctataacaaatgtttatttggagacttgttctaccttcctgaaggtc
cttaaggcccacacaagcttaactatctctagtcgactttctgaggaaatggaaaagtta
aatttaacaattatggactctaatccgcggctgcaaaatggtgcctctgtagattcatct
gcctctgaggggttttcagatgatgttgaggcagaagcaaattcttacttccatcaaatg
ttttccagtcaattgacaattgatgcaatggttcaaatgcttgctcgattcaaggagtca
cctgtaagaagggagcagttaatttttgaatgcatgattggcaatctatttgaggagtat
agattcttcccaaagtatcctgaaaggcaactaaaaattgctgctgttctgtttggttct
gttatcaagcaccagcttgtaactcatctaacacttgggattgccttgcgtggcgtttta
gatgcactacgaaaacccccagattccaaaatgtttgtttttggaacgaaggctttggag
cagtttgtggatcgtctgattgagtggccacaatattgcaaccatatcttacaaatatct
catctgcgtggcactcattcagagcttgtttctttcattgagcgggcgcttgctcggatt
tcatcaggtcatttggaatcagatggaagtaacaatccttcagctgctaatcatcatggt
ttatctcaggctggctcagggaatggggagttaaatagtgttaatgtcacacagcctgtg
cagcaactttcctctgcactgcatgtacagagacacgaaactcctcttgacgaccgtcat
aagatatctgtggtttcatctaacgacaccaaatctcatttatctgctggagggcattct
tcagttgctcctttaggtgatatttcaagtattcagaagaatgtggccagtacttcatcc
atactgtcttcttcacatggtttcatacgtccttctcggggcactacctctgctaggttt
ggctctgctttgaacatcgaaactcttgtagctgccgctgagagaagggaaacaccaata
gaggctccagcatctgagattcaggataaaatatcgttcatcattaacaatatttcagct
gcaaatattgaagctaaagcaaaagagtttactgaaatattgaaagagcagtattatccc
tggtttgcccagtatatggttatgaaaagagcaagcatagagcccaattttcatgatttg
tacttgaagtttcttgataaagttaattcaaaggccttaaataaggagattgtccaggcc
acttatgagaactgcaaggttctcttaggttcagagctaataaaatcaagctcagaggag
cgctcattacttaaaaaccttggaagctggcttgggaaattaacaattggcaggaatcaa
gttctaagggctcgtgaaattgatcccaaatctttgatcatagaggcatatgagaagggg
ctgatgattgctgtaattccatttacttcgaaggttctggagccatgccaaagcagtcta
gcatatcaacctcctaatccctggactatgggtattcttggattgcttgctgaaatttat
tcaatgccaaacttgaaaatgaaccttaagtttgacatagaggttttattcaagaacctt
ggtgtagatttgaaggacataacacccacttcccttttgaaggatcggaaaagagaaatt
gaagggaaccctgatttctctaataaagatgctggagcatcacaaccacagattgttgct
gatgttaagtctggaatgatctctccgctaaatcatgctgagttaccacttgaggttgcc
aatccacctagttctggtggccatacacacttgttatctcagtatgctgctcctgttcat
cttccttcggggacgctgatggaggatgagaaactagctgcgctaggcttgtccgaccag
cttccttctgctcaagggctatttcaagctactccatcccagtcacctttttctgtcagt
cagcttcccactgcaatgcccaacattggaactcatgttataatcaacccgaagctcaat
tcttggggattgcacttgcattttcaaagagtggttcctattgtaatggatagagctatc
aaagaaatagtgtctggcatcgttcagcgtagtgtttctatagcaacacagacaacaaag
gaactcgttttgaaggattatgccatggaatctgatgagacacgaatatataatgcagca
cacttaatggttgcaagtttggcgggaagcttagctcatgtgacgtgcaaggagccatta
cgcacttcaatttcaacgcaactaaggaattctcttcaaggtttgagtgttgcgagtgaa
cttctggagcatgctgtgcaactcgctacgaatgataaccttgatcttgggtgtgcaata
attgagcaggctgctacagataaggcaatacaaaccattgatggggaaatatctcaacaa
ctttctttaagaaggaagcatagggatggtgttggtcctacattttttgatgcaagcatg
tatacccagggttctatgggtgttgtacctgaggccctccgccctaaacccggtcacctg
tctgtctctcaacagcgagtttacgaggactttgttcgacttccatggcaaaaccaatca
agccagagctctcattctgttcctacgggttcatcctcttcttcgggtgctagtggtctg
gctaatacatttggttcggcttcaggttctggacaacttaatgcaggttactcatctcct
ccaggcaatttaggatttgaagcagtctcacggacagtggaaatggcttctgattctgtt
gaatctaactcagctgcgcttcttagtgcatcatctattcatattggggcaagtgatggt
gttatccagcaaaattctgaaaacaactctatcagtgcttccttttcgtctgctgctgct
gcccctgaaccccagctaggggattcctctgatgctgtaaaggaatcaataatttcaccg
cagccaatatcttcatcagctgcttctgatagactggggagtggaatttcagaaccttct
ttaaacacaagggatgcattggataaatatcagattgttgcacaaaagttggaggctttg
attaatagtgatgctagagaagtagaaatccagggagtaattgctgaggttcctgaaata
atacttaggtgtatcagtcgagatgaggctgccttggctgtggcacaaaaggttttcaag
ggtttatatgaaaatgcatcaaacaattttcatgttaatgcttgtcttgcaattctggct
gctattcgtgatgtttgcaagcttgtggttaaagaactcactagctgggtgatttactcg
gacgaggagcggaagttcaacaaagacattactcttggtcttatacacagtgaattgctc
aatcttgcggagtacaatgtacatatggcaaagcttattgatggggggaggaataagggt
gcgactgagtttgctatttcccttgtccaaactctagttatggaagaatcgaaagttata
tctgaactacataatcttgttgatgctttggctaagcttgctgcaaaacctggatctccc
gagtcattacaacaactgattgagattgtgaggaatcctgttgctaattctgctgttttt
tctggctttactgtgggaaaagaagataagacaagacagtctagagataaaaaggctgta
agtcagtctgtatctaacagggaagactatggcaatgctgaatctgtggaaccagatcct
gttggtttgcatgagcaggttaccatgctatttgctgaatggtaccgaatatgtgaactt
ccgggtgcaaatgatgctgcttgtactcattatatcctacaattgcatcaaaatggacta
ttgaagggggatgacatgacagattgctttttccgaatccttacggaactctctgttgca
cattgcttatcctctgaggtgattacttctgctactctgcaatcaactcaacaagggcag
actttgtccttccttgccattgatatttatgccaagcttgttttttctatcctgaaagtg
gagcaaggatctagcagattctttctgttgtcaaagattttggctgttactgtgagattt
atacaaaaggattctgaagagaaaaaaacatcttttaacccaagaccatatttccgactg
attgtgaactggctgatggaccttatctccccagatcctgttattgatggtgcaaacttt
cagatcttgacagcttttgctggggcattccataatttgcagcccctcaaagtgcctgca
ttcagctttgcgtggcttgagctggtgagtcacaggagcttcatgccaaaattgctcaca
ggaaatgctcagaagggctggccgtatgtccaacgcttgcttgtagatctattccagttc
ctggagccatttttgaggagtgctgaactaggaatgccagttcactttctgtacaaaggt
acactaagagtgctgcttgttctgcttcacgatttcccagaatttctctgcgattatcat
ttcaccttctgtgatgtaattcctccaagctgcatacaaatgcgtaatattattctcagt
gccttcccccgcaatatgaggctgccagatccatctactcccaacttgaagattgatttg
cttccagaaataagggaggctcctcacattctttctgaggttgatgcagtcctaaaagca
aagcagatgaaagctgatgtggatgagtatctcaagatggcaactctgcagacgagacaa
cagggttcttcattccttactgaactgaagcagagactactactttcaccgagtgaagct
acctcagccggtacccgatacaatgtaccattgataaactcacttgtgctttatgctggg
atgcaggccattcagcagctgcaagcaagaacacctcatgcacagtcaacagggaacact
tctgctcttgctgtcttattggtggatgctgctctgaatatttaccagacacttatacta
gaactggacactgaaggacgatacctctttttaaatgctgttgccaaccaactacgctac
cctaacaatcatacgcattacttctcatttgtcctactctatttatttgcagaatcaaac
caggaaattattcaggagcagatcacgagagtacttttggaacgcctaatagttaatcga
ccacatccatggggccttctgattactttcatcgagctcatcaagaatcctagatacaac
ttctggaatcgatccttcataagatgtgctccagagattgaaaaactctttgaatcagtg
gcaagatcatgtggtggcttaaagcctatggatgagagtatggtttctagctgggtttct
gagggcacacactga
DBGET
integrated database retrieval system
