Manihot esculenta (cassava): 110616493
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Entry
110616493 CDS
T05761
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110616493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110616493
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110616493
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110616493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
110616493
NCBI-ProteinID:
XP_021614564
LinkDB
All DBs
Position
1:complement(42359118..42377209)
Genome browser
AA seq
2423 aa
AA seq
DB search
MPKLSSAIPNQIRCLFQSLNEANVDSVLQELCQFIEYGVEGSVLVLKTCLERLHFHGTDL
QNGQLESVLVSIFKYLLDKPNFSTVLCQSLRSTEINDEFLENLSNVLHLSLSEKIGIGLA
LSDSDIIETRMSAKKFFMAQVEALCANPVSMNSAEQIQNIVMCLQRSEGLSKHVDHLLRI
LSLLQPKESFPFVLTPLLSDEMREANFLRNVGQFHECEENEFDALLAEMEEEMSTSDILR
ELGYGCTFDASHCKEILSHFLPLSESTISKMLGTVARSHASLEDNQSTFLNFGIAIGCSI
SSDLPLLSSWDIDILVKTIKQLAPGTNWVQVMENMDHEGFYIPNEEAFSFFMSVYRHACQ
DPFPLHAICGSPWKNTLGQLSLLKYAVLAPPEVFTFAHSGRLLVYHGAVHGHKLQLGHAN
HAWLCLDLLDVLCQLAEMGHSSSIQSMLEYPLKHCPEILLLGISHINTAYNLLQYEVSFV
VFPMIIKSGTGNGMIHYLWHINPSLVVLGFVDAHNIEPDCIIKILDICQELKILSSVLDM
IPSPLGIRLAALASRKELVDLEKWLTTNLVTYRDFFFEECLKFLKEVQPGGSQDFSTKPF
RHSSSITDIYMETSSTFLKVLKTHTSLIISSRLSEEMETLNLTIMDSNPPLQSDGSADSS
TPDGFSDDVEAEANSYFHQMFSSQLTIDAMVQMLSRFKESPVRREQLIFECMIGNLFEEY
RFFPKYPEKQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRGTHSELVSFIERALARISSGHLESDGSSNASAAHHHG
LSQASSGNEELNSVSITPPVQQLSSTLHVQERHDSPIDDRHKVFMASSNETKSLLSAGGK
SLIASLGDNSSTQKIVASTTAMSSSHGFVRPSRGATSARFGSALNIETLVAAAERRETPI
EAPASEIQDKISFIINNISSANVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDL
YLKFLDKVNSKTLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQ
VLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLTEIY
SMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDAGASQPQIVA
EVKPAITLSHAELPHEAGNPPNSAGHTHLLSQYAAPVHLSTGTLMEDEKLAALGLSDQLP
PAQGLFQATPSQSHFSVSQLPNPTTTPNIGTHVIINPKLNSWGLHLHFQRVVPIVMDRAI
KEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPL
RTLISTQLRNSLQGLSVASELLEHAVQLATNDNLDLGCAIIEQAATDKAIQTIDGEIAQQ
LSLRRKHRDSVGPTFFDANIYTQGSINVLPEALRPKPGHLSVSQQRVYEDFVRLPWQNQS
SQSSHSILAGSSSSSGAPGLASAFGSGSEQLNVGYSSTPGNLGLEAVSRSLDMASDAIES
NSAAVPSGLAIHTGATDGIISQNSENNSVSASFPSTVPSPAPELQSGDTSDTVKELASQQ
MSSAASDRLSSGVSEPTLNTRDALDKYQIVAQKLEALVNSDAIEAEIQGVIAEVPEIILR
CISRDEAALAVAQKVFKGLYENASNNIHVNACLAILAAIRDVCKLVVKELTSWVSYSDEE
RKFNKDITLGLISSELLNLAEYNVHMAKLIDGGRNKGATEFAISLIQALVIEDSKVISEL
HNLVDALAKLATKPGSPESLQQLIEIVRNPNPVAASAVLSSFAVGKEDKIRQSRDKKAVN
QSIANREDYSNAESVEPVPANLHDQVSKLFAEWYRICELPAANDAAYTHYVLQLHQNGLL
KGDDMTDSFFQILTELSVAHCLSSEGINSGGLQSTQQGHSLSFLAIDIYAKLVFSILKVE
QGSNRFFLLSKILAVTVRFIQKDSEDKKASFNPRPYFRLFVDWLLDLVSPDPVIDGASFQ
ILTAFAGAFHNLQPLRVPSFSFAWLEMVSHRSFMPKLLTGNAQKGWPYVQRLLVDLFQFL
EPFLRSAELGIPVQFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSA
FPRNMRLPDPSTPNLKIDLLPEIREAPHILSEVDAALKAKQMKADVDEYLKTRRQGSSFL
TELKQRLLLSTSETASAGTRYNVPLINSLVLYAGMQEWNSLELQATQQLQARTTHQQSTG
NTAHLLLDAALDIYQTLMLELDTEGRYLFLNAIANQLRYPNNHTHYFSFVLLYLFAESNQ
EIVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVA
RSCGSLKPMDESMVSGWVSEGTH
NT seq
7272 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagttatcgtcagccattccgaatcagattcggtgcttgtttcagagtttgaac
gaggccaacgtcgattctgttctccaagaactctgccagtttattgaatatggagttgag
ggaagtgttctggtgctcaaaacctgcttggaacgcctgcattttcacgggactgacttg
caaaacggtcagctggagtcggttcttgtgtcaattttcaaatatcttctggacaaacca
aatttcagtacggtgctttgtcagtccctaagaagcacagagattaatgatgaattcctg
gaaaatttgtctaatgtgttacatttatctctgtctgaaaaaattggcattggtcttgct
ctgtccgattccgatatcattgaaaccagaatgagtgcaaagaaatttttcatggctcag
gttgaagcattgtgtgcaaatccagtttctatgaattctgcagagcaaattcagaatata
gttatgtgccttcagcggtctgagggcctttccaagcacgtggaccaccttttgcggata
ttatccttattgcaaccaaaagagtcatttccttttgttttaactccactgctttccgat
gaaatgcgcgaggccaattttttgaggaatgtgggtcagttccatgaatgcgaggaaaat
gaatttgatgcacttttagctgaaatggaggaggagatgtccacaagtgatatcttaagg
gaattgggctatggatgcacatttgatgcctcgcactgcaaagagatattgtctcacttc
ttgccgctgtctgagagtactatctcaaagatgcttggaacagttgcacgcagccatgct
agccttgaagacaaccaaagcacatttttaaactttggtatagctattggatgcagcatt
tcctctgatctcccactgttaagttcctgggatattgacatccttgtgaaaactattaag
caactagctcctggtaccaactgggtacaagtgatggaaaatatggatcatgagggattt
tacatccctaatgaggaagcattctctttcttcatgtctgtctatagacatgcttgccag
gatcctttccctctccatgctatttgtggatccccatggaaaaatactctgggtcaacta
tctcttctcaagtatgctgtattggccccaccagaagtgtttacctttgctcattctgga
agactgctggtctatcatggcgcagtacatggtcataagcttcaacttggacatgcaaat
catgcatggttatgtcttgatcttttggatgtactttgtcaactagcagagatggggcat
tctagttctattcaatcaatgcttgaatatcctctgaagcactgtccagaaatcttactt
cttgggatatcacatattaatactgcatataatcttctccagtatgaagtgtcttttgtg
gtttttcctatgataatcaaaagtggcacaggcaatggtatgattcattacctctggcat
ataaatcctagtcttgttgtgctgggatttgtagatgctcacaatattgaaccagactgc
attatcaagatattggacatatgccaagaattaaagatactgtcatcagtgctagacatg
attcctagtcctttgggtatcagattggcagccctagcttcacgaaaagaacttgttgac
cttgagaagtggctgactactaatttagttacatacagggattttttctttgaggaatgt
ctcaagtttttgaaagaggtccaacctggtggatcacaggatttttctaccaaacctttc
cgtcatagtagttctataacagatatttatatggagacctcttctaccttcctgaaggtc
ctcaaaactcatacaagcttaatcatctccagtcgactttctgaggaaatggaaacgtta
aatctaacaattatggactccaatccaccgttgcaaagtgatggctctgcagattcatct
acccctgatgggttttcagatgatgttgaggcagaagcaaattcttacttccatcaaatg
ttttctagtcaattgacaattgatgcgatggttcaaatgctttctcgattcaaggagtca
cctgtgagaagggagcagttaatttttgaatgcatgatcggcaatctatttgaggagtat
agattcttcccaaagtatcctgaaaagcaactaaaaattgctgctgttctatttggttct
gttatcaagcaccagcttgtaactcatctaacacttgggattgccttgcgtggtgttttg
gatgcactcagaaaaccccctgattccaaaatgtttgtgtttgggacaaaggctttggag
cagtttgtggatcgcctgattgagtggccacagtattgcaaccatatcttacagatatct
catcttcgtggtactcattcagagctcgtttctttcattgaacgggcacttgccaggatt
tcatcaggtcatttggaatcagatggaagtagcaatgcttctgctgctcatcatcatggt
ttatctcaagcaagctcaggaaacgaagagttgaatagtgttagtatcacaccgcctgtg
cagcaactttcctccacacttcatgttcaagagagacatgacagtcctattgatgaccgt
cataaagtcttcatggcttcatctaatgagaccaaatctcttttatctgctggagggaaa
tctttgattgcttctttaggtgataattcaagcactcagaagattgtggccagtactaca
gctatgtcttcttctcatggtttcgttcgtccctctcgaggagctacttctgctaggttt
ggctctgctttgaacattgaaacgcttgtagctgctgctgagagaagggaaacacctata
gaggctccagcatctgagattcaggataagatatcgttcatcattaacaatatttcatct
gcaaatgttgaagctaaagcaaaagaatttactgaaatattgaaggagcagtattatccc
tggtttgcccagtatatggttatgaaaagggcaagcattgaacccaattttcacgacttg
tacttgaagtttcttgataaagttaattcgaagaccttaaataaggagattgtccaggcc
acttatgaaaactgcaaggttctcctaggttctgagcttataaaatcaagttcagaggag
cggtcattgctaaaaaatctgggtagctggcttgggaaattaacaattggcaggaatcaa
gttctaagggctcgtgagatagatcccaaatctttgattattgaggcatatgagaagggc
ctgatgattgctgtgattccatttacttcaaagattctagagccatgccaaagcagtcta
gcatatcagcctcctaatccttggacaatgggtattcttggattgcttactgaaatttat
tcaatgccaaacttgaaaatgaaccttaagtttgacatagaggttctattcaagaatctt
ggtgtagatatgaaggacataacacccacttctcttctgaaggatcgcaaaagagaaatt
gaagggaaccctgatttctctaataaagatgctggagcatcacagccacagattgttgct
gaagtcaagcctgcaataacattaagtcatgcagaattaccacatgaagctggcaatcca
cctaattctgctggtcatacgcatttattatctcagtatgctgcacctgttcatctttcc
actgggactttgatggaggatgaaaaactggctgcattaggcttgtctgatcagcttcct
cctgctcaaggactatttcaagctactccatcccaatcacatttttctgtcagtcagctt
ccaaaccccaccacaacacccaacattggaactcatgttatcattaacccgaagctcaat
tcttggggtttgcacttgcattttcaaagggttgttccaattgtaatggatagagctatc
aaagaaatagtgtctggcatcgttcagcgtagtgtttctatagctacacaaacaacaaaa
gaacttgtcttgaaggattatgccatggaatctgatgagacacgaatatataacgcagca
cacttgatggttgcaagtctagctggaagtttagctcatgtgacatgcaaggagccgtta
cgtactttgatttcaactcaactgaggaattcacttcaaggtttgagtgttgcaagtgaa
cttctggaacatgctgtgcaacttgctacaaatgataaccttgatcttggttgtgcaata
attgagcaggctgctacagataaggcaatacaaaccattgatggagaaatagctcaacaa
ctttctttaagaaggaagcatcgggatagtgttggtccaacatttttcgatgcaaacatt
tacacccaaggttctatcaatgttctacctgaggccctccggcccaaacctggtcacctg
tctgtctcacaacagcgagtttatgaggactttgttcggcttccatggcaaaaccaatct
agccagagctcacattctattcttgcaggctcttcatcgtcttctggtgctcctggtctg
gccagtgcatttggttcaggttcagaacaacttaatgtaggctactcatctactccaggc
aatttaggacttgaagcagtctctcggtctctagacatggcttctgatgctattgaatct
aattcagctgcagttcctagtggtttggctatccatactggagcaactgatggcattatc
tcgcagaattctgaaaacaattctgtcagtgcttcatttccttcaactgttccttcccct
gcccctgaacttcagtcaggggatacctcagatactgtaaaggaattggcttcacaacaa
atgtcttcagctgcttctgatagactttcaagtggcgtttcagaacctacattaaataca
agagatgcattggataagtatcagattgttgcacaaaagttggaggccttggttaatagc
gatgctatagaagcagaaatccagggagtaattgcggaggttcctgagatcatacttaga
tgtatcagtcgagatgaggctgcgttggctgtggcacaaaaggttttcaagggtttatat
gaaaatgcatcaaacaatattcatgttaatgcttgtcttgctattctggctgctattcgt
gatgtttgcaagcttgtggttaaagaactcactagttgggtgagttactcagatgaggag
cggaagttcaacaaagatattactcttggccttataagcagtgaattgctcaatcttgca
gagtataatgtgcacatggcaaagcttattgatgggggaagaaacaagggtgcaactgag
tttgctatttctcttatccaagctctagttattgaagactccaaagttatttctgaactc
cataatcttgtcgatgcattggctaagcttgctacaaaacctggatctcctgagtcgttg
caacaattgattgagattgttaggaatccgaatcccgttgctgcttctgctgtgttgtct
agttttgctgtgggaaaagaggataagattagacagtctagagataaaaaggctgtgaat
cagtctattgcaaatagggaagattatagtaatgctgaatctgtggaaccggttcctgct
aatttgcatgaccaggtttccaagctatttgcagaatggtaccgaatatgtgaactccca
gctgcaaatgatgctgcatatactcattatgtactacaattgcatcaaaatggactattg
aagggggatgacatgacagatagctttttccaaatccttacggaactctctgttgcacat
tgcttatcttctgaggggattaattctggtggcctgcaatcaactcagcaagggcacagt
ttgtccttccttgccattgatatttatgcaaaacttgttttttcaatcctaaaggtggag
cagggatcaaatagattctttctgttgtcaaagattttggccgttactgtaagatttata
caaaaagattcagaagataagaaagcatcttttaacccaagaccatatttccgattgttt
gtggactggctattggaccttgtctccccagatcctgttattgatggtgcaagctttcag
atcttgacagctttcgctggtgcattccataatttgcagccccttagggttccttcattc
agctttgcatggcttgagatggtgagtcacaggagctttatgccaaaattgctcacggga
aatgctcagaaagggtggccttatgttcaacgcttgctagtagatttgttccagttcctg
gagccatttttgaggagtgctgaactaggaattcctgttcagtttctgtataaaggtaca
ctaagggtgctgctggttctgcttcatgatttcccagaatttctgtgtgattatcatttc
accttctgtgatgtgattcctccaagctgtatacaaatgcgtaatattatccttagtgct
ttcccccgcaatatgaggctgccggatccatctactcccaacttgaagattgatttgctt
ccagaaataagggaggctcctcacattctctccgaggttgatgcagctcttaaagcaaag
caaatgaaagctgatgtggatgagtatctcaagacaagacggcagggttcttcattcctt
actgaattgaagcagagactactactttcaaccagtgaaactgcctctgctggtacccga
tacaatgtaccattgatcaactcccttgtgctttatgctgggatgcaggaatggaactct
ctggaacttcaggccacccagcagctgcaagcaagaacaactcatcagcagtcaacaggg
aacactgctcacttattgctggatgctgctttagatatttaccagacacttatgctggaa
ctggacactgaagggcgatatttatttctgaatgccattgccaaccaactgcgttatcct
aacaaccatacgcattacttctcatttgtcctgctttatttattcgcagaatccaaccag
gaaattgttcaggagcagatcacaagagtccttctggaacgcttaatagttaatcgtcca
catccatggggccttttgataactttcattgagctcatcaagaatcctagatacaacttc
tggaacagatccttcataagatgtgcacctgagattgaaaagctctttgaatcagtggca
agatcatgtgggagcttaaagcctatggatgagagtatggtctcgggctgggtttctgag
ggtacacactga
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