Manihot esculenta (cassava): 110619381
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Entry
110619381 CDS
T05761
Name
(RefSeq) probable pectate lyase 13 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc00040
Pentose and glucuronate interconversions
mesc01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
110619381
Enzymes [BR:
mesc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
110619381
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
VWC2L_C
Motif
Other DBs
NCBI-GeneID:
110619381
NCBI-ProteinID:
XP_021618483
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Position
7:29462417..29467080
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AA seq
480 aa
AA seq
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MVPNFYILLICLSTFSLLFNGATSFYLSLPHQHPDPEAVAYDVQRRVDDSISVRQLLSTQ
EKDKCKTGNPIDDCWRCDSNWSNNRQRLADCVIGFGQGALGGKGGQIYIVTDSSDRDPAN
PTPGTLRYGVIQDEPLWIIFSTSMTIKLKHELIVNSYKTIDGRGATVHITGNGCITLQYV
SHIIIHNIHVYNCKPSGNTNIASSPTHVGYRGRSDGDGISIYGSQKIWIDHCTLASCTDG
LIDAIMGSTGITISNNYFSHHDEVMLLGHDDGYILDSGMQVTIAFNIFGEALVQRMPRCR
RGYIHVVNNDFTYWEMYAIGGSGNPTINSQGNRYIAPADPNAKEVTKRVDTNEGWADWNW
RTDGDIMVNGAFFVPSGAGLSAQYAKASSVEPKSAGIINQLTMNAGVFGGPRHESFSGPG
FSGYGSSTGTTNTGSVGSSGGDSDYFGMIFGSGAPQPTCASSIFLCILILCTCMVGNILS
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggttcctaacttctacattctcttaatttgcctctctactttttcccttctctttaat
ggagctacttccttctatctctcccttccccaccaacaccctgatcctgaagctgttgcg
tatgatgttcaaaggagagtggatgattctatatcagtaagacaacttttgtcgacccaa
gaaaaggacaaatgcaaaactggaaacccaatcgacgactgctggcggtgcgactccaac
tggtctaacaaccgccagcgcttagccgactgtgtcatcggcttcggtcagggtgcatta
ggcggcaaaggcggccagatctacatagtcaccgactcatccgaccgtgaccccgccaac
ccaactccgggaaccctccgttacggcgtcatccaagacgaacccctctggatcatcttc
tccaccagtatgactatcaagctcaaacacgaacttatcgtcaacagctacaaaaccatc
gacggtcgtggagctaccgtccacattacgggcaatggatgcatcacactccagtacgtc
tcccacattattatccacaacatccacgtctacaattgcaaaccctcgggcaacactaac
atagcatcatcaccaacacacgtcgggtacaggggaagatcggacggtgatggaatctcc
atctatgggtcccagaaaatatggattgatcattgcactctagcatcttgtacagatggt
ttgatcgatgctataatggggtccactgggatcacaatatcaaacaactatttttctcac
catgatgaggtgatgttactggggcacgacgatgggtacattttggactcgggaatgcag
gtgaccatagcctttaatatattcggcgaggcgctggtgcagcgtatgcctcggtgtaga
cgcggatatatacacgtggtgaacaatgatttcacgtactgggagatgtatgcaatcggc
ggtagcggtaaccccaccattaatagtcagggtaatcggtatattgcaccggcggatcca
aatgccaaagaggtgacgaagcgcgtggacacgaacgaaggttgggcagattggaattgg
aggacagatggggacataatggtaaatggagcattcttcgtaccgtcaggagctgggttg
agcgcccagtatgcgaaagcgtctagcgtggagcccaaatcagctggaataattaaccaa
ctcacaatgaacgctggtgtatttggtgggcccaggcatgagagcttctccggtccagga
ttcagcggctacgggagcagcaccggcaccaccaacaccggaagtgttgggtcctccggt
ggtgatagtgactactttggaatgatttttgggagcggcgctccacaacccacttgtgct
agctcgatctttttgtgtattttaattttgtgcacttgtatggttggtaatatattatca
tga
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