Manihot esculenta (cassava): 110620352
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Entry
110620352 CDS
T05761
Name
(RefSeq) eukaryotic peptide chain release factor subunit 1-3
KO
K03265
peptide chain release factor subunit 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110620352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110620352
03012 Translation factors [BR:
mesc03012
]
110620352
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110620352
Translation factors [BR:
mesc03012
]
Eukaryotic type
Release factors
110620352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
acVLRF1
baeRF_family10
Motif
Other DBs
NCBI-GeneID:
110620352
NCBI-ProteinID:
XP_043814882
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Position
8:complement(33078526..33081747)
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AA seq
436 aa
AA seq
DB search
MADGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASN
IKSRVNRQSVLGAITSAQQRLKLYNKVPSNGLVLYTGTIVTDDGKEKKVTIDFEPFRPIN
ASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHG
RGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQS
DMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTG
KYVFGVDDTLKALEMGAVETLIVWENLDISRYALKNSTTGEIVIKHLNKEQEANQNNFRD
SATSAELEVQDKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDM
RDFDELSDDEVYDESE
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggcagatggccatgagactgataagaacattgagatatggaagattaaaaagcttata
aaagcattagaagctgctcgaggcaatggcacaagcatgatttccctaatcatgcctcct
cgtgatcagatctcccgtgttactaagatgcttggtgatgagtttggaactgcttcaaac
attaaaagcagggtcaatcgtcaatctgtgctaggtgcaattacttctgctcaacaaagg
ctcaaactttacaacaaggttccatcaaatgggcttgtgctttacacaggaacaattgtt
actgatgacggaaaggaaaagaaggtgacaatagactttgaaccttttagacccataaat
gcatctctttacctgtgtgacaacaagttccatacagaagctctaaatgagcttctggag
tccgatgacaagtttggctttattgtcatggatggtaatggaaccctttttgggactcta
agcggcaacacccgagaggtgctgcataaatttactgttgacctgcctaagaaacatgga
agaggagggcaatcagcccttcgatttgctcgacttcgaatggagaagcgccacaactat
gtgaggaaaacagctgaacttgccacccagttttttattaatcctgctacaagtcagcct
aatgtttcaggattaattcttgctggatctgccgacttcaagactgagctgagtcagtct
gatatgtttgatcctcggcttcaggctaaaattctgaatgtggttgatgtttcatatggg
ggtgagaatggttttaatcaggcaattgaattatcagcagaaattctctcaaatgtgaag
tttatacaggaaaagcgcttgattggcaagtactttgaggagattagccaggatactggg
aagtatgtctttggtgtggatgacactctgaaggctctagaaatgggtgctgttgagact
ctcattgtatgggaaaatttagatattagtaggtatgcattgaaaaacagcaccactggt
gagattgtcataaagcatttgaacaaggaacaagaggctaaccagaataattttagggat
tcagccacatccgctgagttggaagtccaggataagatgccactgcttgagtggtttgct
aatgagtacaagcggtttggttgcactcttgagtttgttaccaataagtcacaagaagga
tcccagttttgcagagggtttggtgggattggtgggattcttcgttaccagcttgatatg
agggattttgatgagctttctgatgatgaagtttatgatgagtctgaatag
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