Mesoflavibacter sp. HG96: C7H62_0264
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Entry
C7H62_0264 CDS
T06472
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mesq
Mesoflavibacter sp. HG96
Pathway
mesq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mesq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C7H62_0264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesq03021
]
C7H62_0264
03400 DNA repair and recombination proteins [BR:
mesq03400
]
C7H62_0264
Enzymes [BR:
mesq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C7H62_0264
Transcription machinery [BR:
mesq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C7H62_0264
DNA repair and recombination proteins [BR:
mesq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C7H62_0264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
AGA2
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QIJ88074
LinkDB
All DBs
Position
complement(296777..300589)
Genome browser
AA seq
1270 aa
AA seq
DB search
MLVTQAERLNFSSIVNRTEYPDFMDIQIKSFQDFFQLETKSEERGDEGLYNTFLENFPIT
DTRNQFVLEFLDYFIDPPRYTIEECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKSGLKKVLGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTELDKDNIEEILEVGVKTILLHKESSQ
QGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEV
GRYRMNKKLGLDIGMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SSQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAK
VNSMGFIETPYRKVTDGVVDIKGTPTYLSAEEEEEKLIAQATVKVDEDGKILHDKVIARM
EGDFPVMDPKEIHYTDVAPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRPQSP
IVGTGLEKQVASDSRVLINAEGNGVVEYVDANEIVIKYERTEDEAKVSFDSDVKTYPLIK
FRKTNQGTSINLKPIVRKGDTVVKGQVLCEGYATEKGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVREDIFTSIHIDEYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRVGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVINKKLFS
RAIKDKRKRAQDKEDISKLEMLYATKFDELQSVLVDKLFAIVNGKTSQGIFNDLGEEVLP
KGKKFTLKMLNAVDDYTHLTGGTWTTDEHTNKLIADLIHNYKIKENDLQGALRREKFTIS
VGDELPSGIIKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQDLGRKFATPIFDGATIDQINELTDEAGIPRYGHTY
LYDGGTGDRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVVGRAKTYEAIVKGEPMPEPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgttagtaacacaagctgaaagattaaatttctcttctattgtaaatagaacagaatat
cctgactttatggatattcagattaaatccttccaggattttttccaactagaaactaaa
tctgaagaaagaggtgatgaaggactatataacaccttcctagaaaactttccaattaca
gacacacgtaatcaattcgtattagaatttttagattactttatcgatccaccaagatat
actatagaagagtgtattgaaagaggattaacttatagcgtacctttaaaagctagatta
aaattatattgtacagatccagaacacgaagatttcgagactattgtacaagatgtatat
ttaggtactattccatatatgactccaagtggaacttttgttatcaatggagcagaaaga
gttgttgtatctcaattacatagatcgccaggagtattttttggtcaatcattccatgct
aatggaacaaaattatattcagctagagtaataccttttaaaggatcttggatagagttt
gctacagacattaatcaagtgatgtatgcttacatcgatagaaagaaaaaattacctgta
acgactttatttagagcaattggatttgagcgtgataaagatatattagaaatttttgat
cttgcagaagaagttaaagtttctaaatctggtcttaaaaaagtattaggacgaaaatta
gcagcacgtgtacttaacacttggcatgaagatttcgtagatgaagatacaggagaagtt
gtatctattgaacgtaacgaaatagttctagatcgtgatacagaactagataaagataat
attgaagaaatcttagaagtaggagttaaaacaatcttacttcataaagaatcttctcag
caaggtgattatgctattattcataacactttacaaaaagatccaacaaactctgaaaaa
gaagctgtagagcatatctatcgtcaattacgtaacgcagagccgccagatgaggaaaca
gctagaggtataattgataaattattcttctctgatcaacgttattctcttggtgaagtt
ggacgttatagaatgaacaaaaaattaggtcttgatattggtatggacaaacaagttctt
actaaagaagatatcattaccattattaaatatttaatcgagttaatcaattctaaagca
gagattgatgatattgatcacttatctaaccgtcgtgtacgtacagtaggagaacaatta
tcatctcaatttggtgttggtttagctcgtatggctcgtacaattcgcgagcgtatgaat
gtacgtgataacgaagtttttactccaatagacttaattaatgctaagacattatcttca
gtaattaattcattctttggaacaaaccagttatctcagtttatggatcaaacaaatcca
ttagcagagattactcacaaacgtcgtttatctgcattaggaccaggaggattatcaaga
gaaagagcaggattcgaggtacgtgacgttcactatacacactacggaagactttgtcct
attgaaacaccagaaggtccaaatattggattaatttcttcactttcagtatatgctaaa
gtgaattcaatgggattcattgaaactccatatagaaaagtaacagacggtgttgtagat
attaaaggaacaccaacatatttaagtgcagaagaagaagaagaaaagttaatcgctcaa
gcaactgtaaaagttgatgaagatggtaaaatacttcatgataaagtaattgctagaatg
gaaggcgatttcccagtaatggatccaaaagaaattcattatacagatgtagcgcctaac
caaatttcttctatatcagcatctttaatcccattcttagagcatgatgatgccaaccgt
gcattaatgggatcaaacatgatgcgtcaagcagtaccattattaagacctcaatctcca
attgtaggaacaggtcttgaaaaacaggtagcatcagattctcgtgtattaattaatgca
gaaggaaatggtgttgtagaatacgtagacgctaatgaaatagtaattaaatacgagcgt
acagaagacgaagctaaagttagttttgatagcgacgttaaaacatatcctttaatcaag
tttagaaaaactaatcaaggtacatcaataaacttaaagcctattgtaagaaaaggtgat
acagttgttaaaggtcaagtactttgtgaaggttatgctactgaaaaaggagaattagcc
ttaggaagaaatatgaaagtagcctttatgccttggaaagggtataactttgaggatgca
attgtaatttcagaaaaagtagtacgtgaagatatttttacttctattcatatagatgag
tattcattagaagtaagagatacaaaactaggtaatgaagagttaactaacgatatacca
aacgtttctgaagaagctactaaagatttagatgaaaatggtatgatccgcgttggagca
gaagttaaacctggagatattttaattggaaaaattactcctaaaggtgaatctgatcca
acaccagaagaaaaacttttaagagcaatttttggtgataaagctggtgacgtaaaagat
gcatcattaaaagcatcgccttctttacatggtgttgttataaacaaaaaattattttct
agagcgattaaagataaacgtaaaagagctcaagacaaagaagatatttctaaattagaa
atgctatatgcaacaaaatttgacgaattacaatctgtattagtagacaaattatttgct
atagtaaacggtaaaacatctcaaggtatctttaacgatcttggagaagaagtgttgcca
aaaggtaaaaagtttactttaaaaatgttaaacgcagtagatgattatacgcatttaaca
ggaggaacttggacaactgatgagcatactaataagttaatcgcagatttaatccataac
tataagattaaagaaaacgatttacaaggagctttaagacgtgagaaatttacaatatct
gtaggagatgaacttccatcaggaataattaaactagctaaagtttacattgctaaaaaa
cgtaaacttaaagtaggagataagatggcaggacgacatggtaacaaaggtattgttgct
agaattgttcgtcaagaagatatgccattcttagaagatggaacgccagtagatatcgta
cttaacccattaggtgtaccatctcgtatgaatattggacagatttatgaaactgtttta
ggatgggcaggacaagatttaggtagaaaatttgcaactccaatttttgatggagctact
atagatcaaattaatgagttaacagacgaagcaggtataccaagatacggacatacttat
ttatatgatggaggtacaggagatcgttttgatcaacctgcaacagtaggtgtgatttac
atgcttaagcttggtcacatggttgatgataagatgcatgctcgttctattggaccttac
tctttaattacacaacaacctttaggtggtaaagcacaatttggaggtcagcgttttgga
gagatggaagtttgggcactagaagcatatggtgcatcaagcacacttagagaaatcttg
acagtaaaatctgatgacgtggtaggtagagcaaaaacttacgaagcaatcgtaaaagga
gagccaatgccagaaccaggattaccagaatcttttaacgtattaatgcacgaattaaaa
ggattagggttagacattagattagaagaataa
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integrated database retrieval system
