Methylobacterium sp. DM1: C0214_24530
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Entry
C0214_24530 CDS
T05461
Name
(GenBank) helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
metd
Methylobacterium sp. DM1
Pathway
metd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0214_24530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metd03019
]
C0214_24530
03009 Ribosome biogenesis [BR:
metd03009
]
C0214_24530
Enzymes [BR:
metd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C0214_24530
Messenger RNA biogenesis [BR:
metd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C0214_24530
Ribosome biogenesis [BR:
metd03009
]
Prokaryotic type
rRNA helicases
C0214_24530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AWI91094
LinkDB
All DBs
Position
5175978..5177681
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AA seq
567 aa
AA seq
DB search
MPFPSLPSPLARALTERNYAEPTPVQQAVLDAAPDRDLLVSAQTGSGKTVAFGLAIAGTL
LGPEEALPPPAAPLALVIAPTRELALQVQRELTWLYAQTGARVVPCVGGMDPRREARALE
AGVHIVVGTPGRLRDHMERGRLVTDELRAVVLDEADEMLDMGFREDLEFILAETPADRRT
LLFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNVLRYV
DAPVAIVFCNTRDGVRHLQASLTERGFSAVALSGELSQGERNAALQALRDGRARVCVATD
VAARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPARRRRAEQMFAI
AKVSPDWSGPPNADEIRALDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAA
AFARLYRSRIPVPEEVSDPAYETSRRPDSRGVPVGAPRIGDDEPAAWFRLNLGRRDRVEP
RRLLPMLTRRGQIGRGDIGAIRIFDNETAFEVRASAAEDFAAAFARRGPADVRIERMQGD
GPAPAKAPKSPRAQRHRREATKTGRGG
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
ttgccatttccgtctctgccctcccccctcgcccgggcgctcaccgagcgcaactatgcc
gagccgacccccgtccagcaggcggtgctcgatgctgcgccggaccgtgacctgctcgtc
tcggcccagaccggctcgggcaagactgtcgccttcggtctcgccatcgccggcacgctg
ctcgggcccgaggaggccctgccgccgccggccgcgccgctggccctcgtcatcgcgccg
acccgcgaactggcgcttcaggtgcagcgcgagctgacctggctctacgcgcagaccggg
gcgcgggtcgttccctgcgtcggcggcatggacccgcgccgcgaggcccgcgcgctggag
gcgggcgtccacatcgtcgtggggacgccggggcgtctgcgcgaccatatggagcggggc
cggctcgtcaccgacgagctgcgcgccgtcgtcctcgatgaggccgacgagatgctcgat
atgggcttccgcgaggatctcgaattcatcctcgctgaaaccccggcggaccgccgcacc
ctgctgttctcggcaaccctgccgaaggccatcgtcgcactcgccgagagctaccagcgc
gacgccctgcgcctcgcggtcgccggtgagacccgtggacatgccgacatcgtctaccgc
gccgtccgggtgatgccgcgcgaggtcgagcacgccgtcgtcaacgtgctgcgctacgtc
gatgcgccggtggcaatcgtgttctgcaacacccgcgacggggtgcgccatctccaggcc
tcgctgaccgaacgtggcttctcggccgtggcgctctcgggcgaactcagccagggcgag
cgcaacgcggcgctccaggccctgcgcgacggtcgcgcccgggtctgcgtcgccaccgac
gtcgctgcccgcggtatcgatctgccggggctcgacctcgtcatccacgccgacctgccg
cacgatgccgaggtgatgcagcaccgttccggccgtaccggccgcgccggccgcaaaggc
acgagcgtcgtgctggtgccgcccgcgcggcggcggcgcgccgagcagatgttcgccatc
gccaaggtcagccccgattggagcggcccgccgaatgcggacgagatccgcgccctcgac
cgcgagcggatgatgtccgatccgctgctcgccgagcccgagacggaagaggaccgcgag
tgggagcgggaatgggccgaggcgctgatggagcgctgtccgcccgagcgtctcgctgcc
gccttcgcccggctctaccgctcgcgcatccccgtgccggaagaagtcagcgatccggcc
tacgagactagtcgtcgcccggattcccgcggcgtcccggtcggcgccccgcggatcggc
gacgacgagccggcggcgtggttccggctcaatctcggccgccgcgaccgggtcgagccg
cgccgcctgctgccgatgctgacccgtcgcggacagatcggccgcggcgatatcggcgcg
atccggatcttcgacaacgagaccgccttcgaggtgcgggccagcgccgcggaggatttc
gccgccgccttcgcccggcgcgggccggcggatgtccgcatcgagcggatgcagggggac
ggtcccgcgcccgccaaggcgccgaagagcccccgcgcccagcgtcaccgccgcgaggcg
accaagaccggccgcggcggctga
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