Methyloversatilis sp. RAC08: BSY238_2359
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Entry
BSY238_2359 CDS
T04449
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
metr
Methyloversatilis sp. RAC08
Pathway
metr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
metr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BSY238_2359 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metr03021
]
BSY238_2359 (rpoB)
03400 DNA repair and recombination proteins [BR:
metr03400
]
BSY238_2359 (rpoB)
Enzymes [BR:
metr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BSY238_2359 (rpoB)
Transcription machinery [BR:
metr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BSY238_2359 (rpoB)
DNA repair and recombination proteins [BR:
metr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BSY238_2359 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AOF81959
LinkDB
All DBs
Position
2527304..2531380
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYTYTEKKRIRKSFAKRDAVLDVPFLLATQLESYTQFLQAEIPAESRRNQGLQAAFTSI
FPISSHSGNARLEFVHFMLGEPAFDVKECHQRGLTFASPLRARVRLVIMDREAPKETIKE
VKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDYLYFRVDRRRKMPVTILLKAIGMTPTQILSTFFEFDAFDLAAKG
GIQMKLVPERLRGEVAKFDIIDGSGKVVVAKDKRITAKHIRELAESGTEAIVVPEDFLVG
RVFSSAVVDPETGEVLANVNDEITEELLAKLSVAGVGEISTLYVNDLDRGPYISQTLRTD
ETADQWQARVAIYRMMRPGEPPTEDAVETLFHGLFYSEERYDLSAVGRMKFNRRVGRDAI
EGAATLSNEDIVDVIRILVDLRNGKGEIDDIDHLGNRRVRSVGELAENQFRAGLVRVERA
VKERLSQAESDNLMPHDLINAKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNKYGFLETPYRRV
DGSHVTEQIDFLSAIEEGKYVIAQANASLDKKGGLSDELVSCRHKGEFMLSTPDQVQYMD
IAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKAFVGTGIERTVAVDSGT
AVQALRGGVVDYVDANRIVVRVNDDETVPGEVGVDIYNLVKYTRSNQNTNINQRPVVKSG
DIIAKGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRFTSIHIE
ELTVVARDTKLGPEEITRDIASLGEAQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMNGTVIDVQVFTREGIERDKRAQSIVDDMLR
SYRQDLGDQMRIVERDTFARIERLLAGRVANGGPKRLAKGTTITREYLDGVEPHNWFDIR
MADEEIAAQLESLRESLEKTRTDFDVAFELKKKKLTQGDELPPGVQKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKITPIEDMPHMEDGTPVDIVLNPLGVPSRMNIGQILETHLGMAA
RGLGKKIDGMLRRQANLAELRGFMDDIYNSSGKPEEISSLTDDEILELASNLKHGVPFAT
PVFDGAHESEIRRMLELADMPSGGQMTLYDGRTGEAFERQVTVGYMHVLKLHHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVTGRTKV
YENIVKGEHKIDAGMPESFNVLVKEIRSLAIDIDLERF
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctatacctacaccgagaagaagcgcatccgcaaaagctttgccaagcgcgatgcg
gtgctcgacgtgccgttcctgctggcgacccagctggagtcctacacccagttcctgcag
gccgagattcccgccgaatcccgtcgcaatcagggcttgcaggctgcattcacgtcgatc
ttcccgatcagttcgcattccggcaatgcgcgccttgaattcgtgcacttcatgctgggc
gaacccgcattcgacgtgaaggaatgtcaccagcgcggcctgactttcgcgagcccgctg
cgcgcccgcgtgcgcctggtcatcatggaccgcgaagcgccgaaggaaaccatcaaggaa
gtgaaggaacaggaagtgtacatgggcgaaattccgctcatgacgactaccggttccttc
gtgatcaatggcaccgaacgtgtcatcgtcagccagttgcatcgctcgccgggcgtgttc
ttcgagcatgaccgcggcaagacccacagttccggcaagctgctgttctcggcccgcatc
attccctaccgcggctcctggctggacttcgaattcgatccgaaggactacctgtacttc
cgcgtcgaccgtcgccgcaagatgccggtcacgatcctgttgaaggcgatcggcatgacg
ccgacgcagatcctgtcgaccttcttcgaattcgacgccttcgacctggccgccaagggc
ggcatccagatgaagctggtgccggaacgtctgcgcggtgaagtcgccaaattcgacatc
atcgacggttcaggcaaggtcgttgtggcgaaggacaagcgcatcaccgccaagcacatc
cgcgaactcgccgagtcgggcaccgaagccattgtggttccggaagacttcctcgtcgga
cgcgtattctcgagtgctgtggtcgatccggaaaccggcgaagtgctggcaaacgtgaac
gatgaaatcaccgaagaactgctggccaagctcagcgtagcaggcgtcggcgagatttcg
acgctgtacgtgaacgacctggaccgcggcccgtacatttcgcagaccttgcgtaccgac
gaaaccgctgatcagtggcaggcgcgcgtcgccatctaccgcatgatgcgtccgggcgag
ccgccgacggaagatgcggtggaaacgctgttccacggcctgttctattcggaagagcgc
tacgacctgtcggccgtgggccgcatgaagttcaaccgccgtgtcggccgcgatgcaatc
gaaggcgcagcaacgctgtccaatgaggacatcgtcgacgtcatccgcatcctggtcgat
ctgcgcaacggcaagggcgagatcgacgacatcgaccacctcggcaatcgccgcgtgcgt
tcggtcggcgaactggcggagaaccagttccgcgccggtctggtgcgcgttgagcgcgcc
gtgaaggagcgtctgtcgcaggccgagtcggataacctgatgccgcacgatctgatcaac
gccaagccgatcagcgcagcgatcaaggagttcttcggttccagccagctgtcgcagttc
atggaccagaccaatccgctgtcggaaatcacgcacaagcgtcgcgtgtccgcactgggc
ccgggcggtctgacgcgcgaacgcgcaggcttcgaagtgcgcgacgtgcacccgacgcat
tacggccgtgtgtgcccgatcgaaacgcctgaaggcccgaacatcggcctgatcaattcg
ctcgcgctgtacgcccgcaccaacaagtacggcttcctcgaaacgccgtatcgccgtgtc
gatggcagccatgtcaccgaacagatcgatttcctgtcggcgatcgaagaaggcaagtac
gtgatcgcgcaggcgaatgcgtcgctcgacaagaagggtggtctgtccgacgagctggtg
tcctgccgtcacaagggcgaattcatgctgtcgacgccggatcaggtccagtacatggac
attgcgccaggccagatcgtgtcggtcgccgcgtcgctgattccgttcctcgagcacgat
gatgcgaaccgcgctttgatgggcgccaacatgcagcgtcaggccgtgccctgcctgcgt
ccggaaaaagccttcgtcggcaccggcatcgaacgcacggttgcggtcgactcgggtacc
gcggtgcaggcactgcgcggtggcgtggtcgactacgtcgatgcgaaccgcatcgtggtg
cgcgtcaatgacgacgaaaccgtgccgggcgaagtcggcgtcgacatctacaacctggtg
aagtacacgcgttcgaaccagaacacgaatatcaaccagcgtccggtggtcaagagcggt
gacatcatcgccaagggcgacgtcgtggccgacggtgcttcgaccgacctcggcgaactg
gcgctcggccagaacatgctggtcgccttcatgccgtggaacggctacaacttcgaggat
tcgatcctgatttcggaacgcgtggtggcggaagaccgcttcacgtcgatccacatcgag
gagctgacggtcgtcgcacgcgacaccaagctgggcccggaagaaatcacgcgcgacatc
gcgtcgctcggcgaagcccagctcggccgtctcgacgagtccggcatcgtatatatcggc
gccgaagtcgaagccggtgacgtgctggtcggcaaggtgacgcccaagggcgaaacccag
ctgacgccggaagaaaagctgctgcgcgcgatcttcggcgaaaaggcttcggacgtgaag
gatacctcgctgcgcgtgccgtccggcatgaacggcacggtgatcgatgtgcaggtgttc
acccgcgaaggcatcgagcgcgacaagcgcgcgcagtcgatcgtcgatgacatgctgcgc
agctatcgccaggatctgggcgaccagatgcgcatcgtcgaacgcgacacattcgcccgt
atcgagcgactgctcgccggtcgtgtcgccaatggcggcccgaagcgtctggccaagggc
acgacgatcacccgcgagtacctcgacggcgtggaaccccacaactggttcgacatccgc
atggcggacgaagagatcgcggcgcaactcgagagcctgcgcgagtcgctggaaaagacc
cgtaccgacttcgacgttgcgttcgaactgaagaagaagaagctgacgcagggcgacgag
ctgccgccaggcgtgcagaagatggtcaaggtctacctggccgtgaagcgccgcctgcag
ccgggcgacaagatggcaggccgtcacggcaacaagggtgtggtgtcgaagatcactccg
atcgaagacatgccgcacatggaagacggcacgccggtcgacatcgtgctcaatccgctc
ggcgtgccgtcgcggatgaacatcggccagattctcgaaacccacctcggcatggctgcg
cgcggcctgggcaagaagatcgatggcatgctgcgtcgtcaggcgaatctcgccgagctg
cgaggtttcatggatgatatctacaacagcagcggcaagccggaagaaatctcctcgctg
accgacgatgaaattctggagctggcgagcaacctgaagcacggcgtgccgttcgcaacg
ccggtgttcgacggcgcgcatgagtccgaaatccgtcgcatgctggagcttgccgacatg
ccgtccggcggtcagatgacgctgtacgacgggcgcaccggcgaggccttcgagcgtcag
gtgaccgtaggttatatgcacgtgctgaagctgcatcacctggtcgatgacaagatgcac
gcccgttcgaccggcccgtactcgctcgtcacccagcaaccgctgggcggcaaggcgcag
ttcggcggtcagcgcttcggtgaaatggaagtgtgggcgctggaagcttacggcgcgtcc
tacacgctgcaggaaatgctcaccgtcaagtccgacgacgtcacgggtcgtacgaaggtg
tacgagaacatcgtcaagggcgagcacaagatcgatgccggcatgccggagtcgttcaac
gtgctggtgaaggaaatccggtcgctggccatcgacattgatttggagcggttctag
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integrated database retrieval system
