Candidatus Methanogranum gryphiswaldense: KRP56_01560
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Entry
KRP56_01560 CDS
T08253
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
meuz
Candidatus Methanogranum gryphiswaldense
Pathway
meuz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meuz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KRP56_01560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meuz03019
]
KRP56_01560
Messenger RNA biogenesis [BR:
meuz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
KRP56_01560
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
KRP56_01560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF349
Motif
Other DBs
NCBI-ProteinID:
UAL07971
LinkDB
All DBs
Position
complement(276437..277180)
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AA seq
247 aa
AA seq
DB search
MSGHTDMVLVDEKGIRIDGRTAEQHRPIHIEAGVLSNADGSAYLEIGKNKVLAAVYGPRE
CHPRHLQDPTKAIIQCKYNMQAFSVSDRKRPGPDRRSVEISKIIAEALEKVVLTELYPRA
SIDVYIEILQANAGTRCAGLTAASVALADAGIPMRDIVPAIAAGKADGHVLLDLNKEEDN
YGQADVPLAIVPSTDDIVLLQMDGNMTREEFDHAIDMAFGACHEVYEEQKSALKKRYDSK
LKQEESE
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgagcggacacacagatatggtattagttgacgaaaagggcataaggatcgacggcagg
accgccgaacaacacaggcccattcacattgaagcaggggtcctcagtaacgctgatggt
tctgcatatttagaaattggaaagaacaaggtactcgcagcggtctacggtcccagggaa
tgtcatcccagacatcttcaggatcctaccaaggcgatcattcaatgcaaatataacatg
caggccttctcagtaagcgataggaagagaccaggacccgacagaaggtccgttgagatc
tccaagatcatcgcagaagcgttggagaaggtagttctgaccgaactttacccacgtgca
tccattgatgtctacattgagatcctccaggcaaacgccggaacaagatgcgcaggtttg
accgctgcgtcggtcgcactcgcggatgcaggtatcccgatgagagatatcgtccccgca
atagctgcaggcaaagcggacggccacgtgttacttgacctgaacaaggaagaggataac
tacggacaggcagacgtgcccctcgcaatagtaccgtcaaccgacgatatcgttctttta
caaatggacgggaacatgacccgtgaagagttcgaccatgcgatcgatatggccttcggt
gcatgccacgaagtctatgaagagcagaaatcggcactcaaaaaacgttatgattccaaa
ctcaaacaggaggaatcagaatga
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