Martelella endophytica: TM49_20030
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Entry
TM49_20030 CDS
T03801
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mey
Martelella endophytica
Pathway
mey03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mey00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TM49_20030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mey03021
]
TM49_20030
03400 DNA repair and recombination proteins [BR:
mey03400
]
TM49_20030
Enzymes [BR:
mey01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TM49_20030
Transcription machinery [BR:
mey03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TM49_20030
DNA repair and recombination proteins [BR:
mey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TM49_20030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AJY47440
UniProt:
A0A0D5LU03
LinkDB
All DBs
Position
complement(4305282..4309424)
Genome browser
AA seq
1380 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLQAVFK
SVFPMTDFSGASMLEFVSYEFEQPKFDVEECRQRDLTYAAPLKVKLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTNNATFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDTEEILETFYEKAPYTR
DGEGWKVPFSPERLRGQKAVTDLVDADSGEVVIEAGKKLTPRMLKKLSDGGVKALKVSDE
ELYGTFLAEDIVNMETGEIYLEAGEELDEKNLAGIIEQGIDELSILNIDHVNVGAYIRNT
LVADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LDAPDTMRVLRKDDILAVVKTLVDLRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQINPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKISDDGKLTDDVIYLSAMEEAKYYIAQANSVMNDDGTFSEEFVVCRHAGEVMLAPREN
INLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVA
RDSGAAIAAKRGGIVDQVDATRIVIRATEDLDASKSGVDIYRLMKFQRSNQNTCVNQRPL
VRVGDILNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVSDDVFTS
IHLEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPK
GESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIER
EEIERLAKDRDDEQAILDRNVYARLSDMLRGQTSIAGPKGFKKGVELSDEVIQAYPRSQW
WMFAVESEDVQGELEALRGQYDESKNRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVK
RKIQPGDKMAGRHGNKGVVSRILPAEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHL
AWGCAGMGKRIGEMLEEYRETNDIAPLKETLTKVYASEAKDEVSTFDDESLVRLADEAKR
GVSIATPVFDGAHEGDVSEMLSWAGYDPSGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENQAEAPEEPEAELPDAAE
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcctttaatggtcgcaggcgcgtacgcaagtttttcggaaagatc
ccggaagtcgcggaaatgccgaacctcatcgaggttcagaaggcatcatacgaccagttc
cttatggtagacgagcccaagggcggtcgtcccgacgaggggctgcaggcggttttcaaa
tccgtctttccgatgaccgatttctcgggcgcttcgatgctcgaattcgtttcctacgag
ttcgaacagccgaagttcgacgttgaggaatgccgccagcgcgacctcacctatgcagcg
ccgctgaaggtgaagctgcgtcttatcgtgttcgatatcgacgaagataccggcgcgaag
tccatcaaggacatcaaggaacagtccgtttacatgggcgatatgccgctcatgaccaac
aacgcgacgttcatcgtcaacggtaccgagcgcgttatcgtctcgcagatgcaccgttcg
ccgggcgtgttcttcgaccacgacaagggcaagagccactcctccggcaagctgctgttt
gctgcccgcgtgatcccgtatcgtggttcctggctcgacatcgagttcgacgccaaggac
atcgtctatgcacgtatcgaccgtcgccggaagatcccggtaacgtcgctgctgatggcg
ctcggcatggataccgaggaaatcctcgaaaccttctatgagaaggcgccctacacgcgt
gatggcgaaggctggaaggttcccttctcgccggagcggctgcgcggccagaaagccgtc
accgatctcgtcgacgccgacagcggcgaagtcgtcatcgaggccggcaagaagctgact
ccgcgcatgctgaagaagctttccgacggcggcgtcaaggcgctgaaggtcagcgacgaa
gagctttacggcaccttccttgcggaagacatcgtcaacatggaaacgggcgagatctat
ctcgaagccggcgaagagctggacgagaagaaccttgccggcatcatcgagcagggcatc
gacgaactgtcgatcctcaacatcgaccatgtcaacgtcggtgcctatatccgcaacacg
ctggttgccgacaagaacgagaaccgccaggacgcgctgttcgacatctaccgtgtcatg
cgccccggcgagccgccgaccatggattcggccgaagcgatgttcaactcgctgttcttc
gacgccgagcgctacgacctttcggccgtcggtcgcgtcaagatgaacatgcgtctcgac
ctcgacgctccggacaccatgcgcgtgctgcgcaaggacgacatcctggccgtcgtcaag
acgctggtcgacctgcgtgacggcaagggcgagatcgacgacatcgacaatctcggcaac
cgtcgtgtccgctccgttggtgagctgatggagaaccagtatcgtctgggtctcctgcgc
atggagcgcgcgatcaaggaacgtatgtcctcgatcgagatcgacaccgtgatgccgcag
gacctgatcaatgccaagccggcagctgctgccgtgcgtgagttcttcggctcctcgcag
ctttcgcagttcatggaccagatcaacccgctgtcggaaatcacccacaagcgtcgtctt
tcggcacttggcccgggcggtctgacgcgcgaacgcgccggcttcgaagtccgcgacgtg
catccgacccactacggccgtatctgcccgatcgagacgccggaaggcccgaacatcggt
ctgatcaactcgcttgcgaccttcgcccgcgtcaacaagtacggcttcatcgagagcccg
taccgcaagatttcggatgacggcaagctgaccgacgatgtgatctacctctccgccatg
gaagaggccaagtactacatcgcccaggccaactcggtgatgaacgatgacggcaccttc
tccgaagagttcgtcgtctgccgtcatgccggcgaagtcatgctggccccgcgcgaaaac
atcaacctgatggacgtttcgccgaagcagctcgtttccgttgccgccgctcttattccg
ttcctggaaaacgacgacgctaaccgcgcgctgatgggctcgaacatgcagcgtcaggcc
gtgccgcttctcagagccgaagctccgttcgtcggtaccggcatggaaccggtcgttgcc
cgtgactcgggcgctgcgatcgctgccaagcgtggtggtatcgtcgaccaggttgacgcg
acccgtatcgttatccgcgccaccgaagacctcgatgcgtcgaagtcgggcgttgatatc
taccggctgatgaagttccagcgttcgaaccagaacacctgcgtcaaccagcgtccgctg
gtgcgcgtcggtgacattctgaacaagggcgacatcatcgctgacggtccgtcgacggat
ctcggcgacctggcgctcggccgtaacgcgctcgtcgcgttcatgccctggaacggctac
aactacgaggactcgatcctgctttccgagcggatcgtttcggatgacgtcttcacctcg
atccatctggaagaattcgaggtcatggcccgtgacaccaagctcggtccggaagaaatc
acccgcgacattccgaacgtttcggaagaagcgctgaagaacctcgatgaagccggtatc
gtctacatcggcgcggaagtgcatccgggcgatattctcgtcggcaagatcacgccgaag
ggcgaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggct
tcggacgttcgcgacacctcgatgcgcatgccgcccggcaccttcggtaccgtcgttgaa
gttcgcgtcttcaaccgtcacggcgtcgagaaggacgagcgcgccatggcgatcgagcgt
gaggaaatcgaacgcctcgccaaggaccgcgacgacgagcaggccattctggaccgcaac
gtctatgcccgtctttccgacatgctgcgcggccagacctcgattgcaggcccgaagggc
ttcaagaagggtgtcgagctctccgatgaggtgatccaggcctatccgcgttcgcagtgg
tggatgtttgccgttgaaagcgaagacgttcagggcgaactcgaagcgctccgtggccag
tacgacgaatccaagaaccggcttgaacagcggttcatggacaaggtcgagaaggtccag
cgcggcgacgaaatgcctccgggcgtgatgaagatggtcaaggtcttcgtggctgtgaag
cgcaagatccagccgggcgacaagatggctggccgtcacggcaacaagggtgtggtctcc
cgcatcctgccggccgaggacatgccgttcctggaagacggtacgcatgtcgatgtcgtg
ctgaacccgctcggcgtgccgagccgcatgaacgtcggtcagatcctcgagacgcatctg
gcctggggttgtgccggcatgggcaagcgcattggcgagatgctcgaagagtatcgcgag
accaatgacatcgcgccgctgaaggaaacgctgaccaaggtctatgcctcggaagccaag
gacgaagtctcgaccttcgatgacgagagcctggtgcgtctggccgatgaagccaagcgc
ggtgtctcgattgcaacaccggtctttgacggtgcgcatgaaggcgacgtctcggaaatg
ctgtcctgggcaggctatgatccgtcgggtcagtcggttctttatgacggccgtaccggc
gaacccttcgaccgcaaggtgaccgtgggctacatgtacatgatcaagctcaaccacctg
gttgacgacaagatccacgcccgttcgatcggtccgtactcgctcgtcacccagcagccg
ctcggtggtaaggcgcagttcggtggccagcgcttcggcgaaatggaggtctgggctctg
gaagcttacggcgccgcctacacgctgcaggaaatgctgaccgtgaagtcggatgacgtt
gccggtcgtaccaaggtctatgaagccattgtccgtggtgatgatacgttcgaagccggt
attccggaaagcttcaacgttctcgtcaaggaaatgcgctcgctgggcctgtcggttgaa
ctcgaaaaccaggccgaggctcccgaagagcctgaggcagagcttcccgacgctgcggaa
tga
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integrated database retrieval system
