Methanobacterium formicicum DSM1535: DSM1535_1543
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Entry
DSM1535_1543 CDS
T03743
Symbol
lig
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mfi
Methanobacterium formicicum DSM1535
Pathway
mfi03030
DNA replication
mfi03410
Base excision repair
mfi03420
Nucleotide excision repair
mfi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSM1535_1543 (lig)
03410 Base excision repair
DSM1535_1543 (lig)
03420 Nucleotide excision repair
DSM1535_1543 (lig)
03430 Mismatch repair
DSM1535_1543 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfi03032
]
DSM1535_1543 (lig)
03400 DNA repair and recombination proteins [BR:
mfi03400
]
DSM1535_1543 (lig)
Enzymes [BR:
mfi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DSM1535_1543 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
DSM1535_1543 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
DSM1535_1543 (lig)
DNA replication proteins [BR:
mfi03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
DSM1535_1543 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
DSM1535_1543 (lig)
DNA repair and recombination proteins [BR:
mfi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DSM1535_1543 (lig)
NER (nucleotide excision repair)
Other NER factors
DSM1535_1543 (lig)
MMR (mismatch excision repair)
Other MMR factors
DSM1535_1543 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CEA13876
UniProt:
A0A090JWG4
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All DBs
Position
1540128..1541834
Genome browser
AA seq
568 aa
AA seq
DB search
MVVNQFNGDILMLYEDLVEVYQDLDSTTKRLEKTDILANFLAKVGEEEPELIPMVTLLSL
GRIFPTWSEEELGIGSKLLMKAISKAVGVSPGEVENQMRDAGDIGLAAEELYQKKSQVTL
FSRPLTIKKVHRNLVKMAEVSGNRAQFKKIDLLMELLSSASPSEAKYLTRTVLEELRVGV
GEGTIRDAISQAFNIPTEVAERAHMLTNDMGLVASVAWKEGEEGLKKLTLKPGKPVKPML
AQLSPGIKESVEEMGWALCETKYDGIRVQIHRHGDKIDIFTRRLENISLALPEITQYIEK
SLPHEDFIVEGEIIASRDGKPISFQYMLQRVRRKYEIDKMVSKIPLTIYLFDVLYYHQPT
LDEPLQERRKILESLVKVENDRVELSAQVKVHPEEIHRAQDLFELSIKQGHEGIMIKDPQ
APYMPGIRGKKMLKLKAEPETLDLVVIGGTYGKGKRAHLIGSYLMAIRDEDDKLKPLAYA
ATGLDDKTLLELSEMVEPLIESKDGRQVKIVPSIIMEIAFSEIVESPESEVGYSLRFPVV
KRIRNDIGLDEIDTLERIKSIFKNSEKS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaaatcagtttaacggtgatattctaatgttatatgaagatttagtggaggtc
taccaggatctggactctaccaccaaacgtctggagaaaacagatatcttggccaatttt
ctggctaaagtgggagaagaagaaccggaactcatccccatggtaactttactgtccctg
ggcagaattttccccacctggagtgaggaagaactggggatagggtcgaaacttctgatg
aaggccatttctaaggcagttggtgtttctcccggtgaggtggaaaatcagatgcgtgat
gccggggatattggcctggccgctgaggagttataccagaagaaaagtcaggtgaccctt
ttcagccgaccactgaccataaagaaggtacaccgtaatctggtgaaaatggcggaagtt
tctggaaaccgggcccagtttaagaagatagaccttttaatggaattattatcatcggcg
tcaccttcagaggctaagtacctcacccgcaccgtgctggaggaactacgggtaggtgtg
ggggagggaaccatccgtgatgccatttcccaagcctttaacatccctactgaagtagcc
gaaagggcgcacatgttaaccaacgacatgggattggtggcttctgtggcctggaaagaa
ggggaggaaggactgaaaaaattaactttaaaacctggaaaaccagttaaacccatgctg
gctcagttatccccgggtattaaggaaagtgtggaggaaatgggatgggcgctctgtgaa
actaaatacgatggtataagggttcaaatccacaggcacggtgataagattgacatattc
accagaagactggaaaatatcagcctggcccttccagaaatcacacaatacattgaaaaa
tccctcccccacgaagattttattgttgagggagaaattattgccagcagggatgggaaa
ccgatatcattccagtacatgcttcagagggtacgaaggaaatatgaaatcgataaaatg
gtctctaaaatcccgttaaccatctatctgtttgatgtactctactaccaccagcccact
ctggatgaacctcttcaggagaggagaaaaatactcgaatcactggttaaagtggaaaat
gaccgggtagagctttcggcccaggttaaagtccatccggaagagattcatcgggcccag
gatctctttgaactttccattaaacagggtcacgagggtatcatgatcaaggacccccag
gcaccctacatgccgggtataagggggaaaaagatgcttaaattaaaagccgaaccagaa
accctggatctggtggtgattgggggcacttacggtaagggtaaacgtgcccatttaatt
ggctcctacctgatggcgattcgggatgaagatgataaactcaaacctctggcctatgct
gccacgggactggacgataaaaccttactggaactttcagaaatggtagaaccacttatc
gaaagcaaagatggtagacaggtgaagatagttccctctataatcatggaaattgccttt
agtgagatagtggaaagtccggaatctgaggttggctactctctacgtttcccggtggtt
aaaaggatccgcaatgatattggtctggatgaaattgacaccctggaaagaattaaatcc
atcttcaaaaactcagagaaaagttaa
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