KEGG   Methanobacterium formicicum DSM1535: DSM1535_1543
Entry
DSM1535_1543      CDS       T03743                                 
Symbol
lig
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mfi  Methanobacterium formicicum DSM1535
Pathway
mfi03030  DNA replication
mfi03410  Base excision repair
mfi03420  Nucleotide excision repair
mfi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mfi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DSM1535_1543 (lig)
   03410 Base excision repair
    DSM1535_1543 (lig)
   03420 Nucleotide excision repair
    DSM1535_1543 (lig)
   03430 Mismatch repair
    DSM1535_1543 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mfi03032]
    DSM1535_1543 (lig)
   03400 DNA repair and recombination proteins [BR:mfi03400]
    DSM1535_1543 (lig)
Enzymes [BR:mfi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DSM1535_1543 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     DSM1535_1543 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     DSM1535_1543 (lig)
DNA replication proteins [BR:mfi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    DSM1535_1543 (lig)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     DSM1535_1543 (lig)
DNA repair and recombination proteins [BR:mfi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DSM1535_1543 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     DSM1535_1543 (lig)
   MMR (mismatch excision repair)
    Other MMR factors
     DSM1535_1543 (lig)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: CEA13876
UniProt: A0A090JWG4
LinkDB
Position
1540128..1541834
AA seq 568 aa
MVVNQFNGDILMLYEDLVEVYQDLDSTTKRLEKTDILANFLAKVGEEEPELIPMVTLLSL
GRIFPTWSEEELGIGSKLLMKAISKAVGVSPGEVENQMRDAGDIGLAAEELYQKKSQVTL
FSRPLTIKKVHRNLVKMAEVSGNRAQFKKIDLLMELLSSASPSEAKYLTRTVLEELRVGV
GEGTIRDAISQAFNIPTEVAERAHMLTNDMGLVASVAWKEGEEGLKKLTLKPGKPVKPML
AQLSPGIKESVEEMGWALCETKYDGIRVQIHRHGDKIDIFTRRLENISLALPEITQYIEK
SLPHEDFIVEGEIIASRDGKPISFQYMLQRVRRKYEIDKMVSKIPLTIYLFDVLYYHQPT
LDEPLQERRKILESLVKVENDRVELSAQVKVHPEEIHRAQDLFELSIKQGHEGIMIKDPQ
APYMPGIRGKKMLKLKAEPETLDLVVIGGTYGKGKRAHLIGSYLMAIRDEDDKLKPLAYA
ATGLDDKTLLELSEMVEPLIESKDGRQVKIVPSIIMEIAFSEIVESPESEVGYSLRFPVV
KRIRNDIGLDEIDTLERIKSIFKNSEKS
NT seq 1707 nt   +upstreamnt  +downstreamnt
atggttgtaaatcagtttaacggtgatattctaatgttatatgaagatttagtggaggtc
taccaggatctggactctaccaccaaacgtctggagaaaacagatatcttggccaatttt
ctggctaaagtgggagaagaagaaccggaactcatccccatggtaactttactgtccctg
ggcagaattttccccacctggagtgaggaagaactggggatagggtcgaaacttctgatg
aaggccatttctaaggcagttggtgtttctcccggtgaggtggaaaatcagatgcgtgat
gccggggatattggcctggccgctgaggagttataccagaagaaaagtcaggtgaccctt
ttcagccgaccactgaccataaagaaggtacaccgtaatctggtgaaaatggcggaagtt
tctggaaaccgggcccagtttaagaagatagaccttttaatggaattattatcatcggcg
tcaccttcagaggctaagtacctcacccgcaccgtgctggaggaactacgggtaggtgtg
ggggagggaaccatccgtgatgccatttcccaagcctttaacatccctactgaagtagcc
gaaagggcgcacatgttaaccaacgacatgggattggtggcttctgtggcctggaaagaa
ggggaggaaggactgaaaaaattaactttaaaacctggaaaaccagttaaacccatgctg
gctcagttatccccgggtattaaggaaagtgtggaggaaatgggatgggcgctctgtgaa
actaaatacgatggtataagggttcaaatccacaggcacggtgataagattgacatattc
accagaagactggaaaatatcagcctggcccttccagaaatcacacaatacattgaaaaa
tccctcccccacgaagattttattgttgagggagaaattattgccagcagggatgggaaa
ccgatatcattccagtacatgcttcagagggtacgaaggaaatatgaaatcgataaaatg
gtctctaaaatcccgttaaccatctatctgtttgatgtactctactaccaccagcccact
ctggatgaacctcttcaggagaggagaaaaatactcgaatcactggttaaagtggaaaat
gaccgggtagagctttcggcccaggttaaagtccatccggaagagattcatcgggcccag
gatctctttgaactttccattaaacagggtcacgagggtatcatgatcaaggacccccag
gcaccctacatgccgggtataagggggaaaaagatgcttaaattaaaagccgaaccagaa
accctggatctggtggtgattgggggcacttacggtaagggtaaacgtgcccatttaatt
ggctcctacctgatggcgattcgggatgaagatgataaactcaaacctctggcctatgct
gccacgggactggacgataaaaccttactggaactttcagaaatggtagaaccacttatc
gaaagcaaagatggtagacaggtgaagatagttccctctataatcatggaaattgccttt
agtgagatagtggaaagtccggaatctgaggttggctactctctacgtttcccggtggtt
aaaaggatccgcaatgatattggtctggatgaaattgacaccctggaaagaattaaatcc
atcttcaaaaactcagagaaaagttaa

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