Mycobacterium florentinum: MFLOJ_26040
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Entry
MFLOJ_26040 CDS
T06524
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mfj
Mycobacterium florentinum
Pathway
mfj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mfj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MFLOJ_26040 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfj03021
]
MFLOJ_26040 (rpoC)
03400 DNA repair and recombination proteins [BR:
mfj03400
]
MFLOJ_26040 (rpoC)
Enzymes [BR:
mfj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MFLOJ_26040 (rpoC)
Transcription machinery [BR:
mfj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MFLOJ_26040 (rpoC)
DNA repair and recombination proteins [BR:
mfj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MFLOJ_26040 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF496
Motif
Other DBs
NCBI-ProteinID:
BBX78817
LinkDB
All DBs
Position
complement(2735459..2739409)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVERKGVEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLDDIWTTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEADILRDVIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVAGAEGEYR
AAGKDQPEQGVYSSPAEAIMASDRGLLSVRAQIKVRLTQLRPPAEIETELFGQNGWQPGD
SWMAETTLGRVLFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDHYEDRADKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGKALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIIVE
LAERQPDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPSIEALLAAGITQI
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVTGRVQLEDGERFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgtattggcctggccaccgcggaagacatc
aggcaatggtcttacggcgaggtcaagaagccggagacgatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgtggcgtc
gaggtaactcgggccaaggtgcgtcgcgagcggatgggacacatcgagctggccgcaccg
gtcacgcacatctggtacttcaagggcgtgccttcgcgcctcgggtacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgcggcctacgtgatcaccgcggtcgac
gacgagatgcggcacaacgagctctcgacgctcgaggccgaaatggtggtggagcgcaag
ggtgttgaggaccagcgcgacgccgacctggaggcccgtgcccagaagctggaggccgac
ctggccgagctggaggccgagggcgcgaaagccgatgcgcggcgcaaggttcgcgacagt
ggcgagcgcgagatgcgtcagatccgcgaccgggcccagcgcgagctggaccggctcgat
gacatctggacgacgttcaccaagctggctcccaagcagctgatcgtcgacgagaacctc
taccgcgagctcgtcgaccggtacggcgagtacttcaccggggccatgggcgcggagtcg
atccagaagttgatcgagaacttcgacatcgacgccgaggccgacatcctgcgtgacgtc
atccgaaacggcaaggggcagaagaagcttcgtgcgctgaagcgtctgaaggtcgtcgcg
gccttccaacagtcgggtaactcgccgatgggcatggtgctcgacgcggtgccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccggttcgccacgtccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagaggctgatcgacctc
ggtgcgcccgagatcatcgtcaacaatgagaagcggatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgtcgcggccgtccggtcaccgggccgggtaaccgtccgctgaag
tcgttgagcgacttgctcaagggtaagcagggccggttccgtcagaacctgctcggtaag
cgtgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcgaatggtcgagcgccagcgt
ccccaggtgtgggacgtgctcgaagaggtcatcgccgagcacccggttctgctgaaccgt
gcgcccacgctgcatcgactcggcattcaggctttcgagccaatgctggtggagggcaag
gccattcagctgcacccgttggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgagtgccgaggcgcaggccgaggctcgcatcttgatgctg
tcgtcgaacaacatcctgtcgcccgcgtccggccgcccgctggccatgccgcgactcgac
atggtgaccgggctgtactacctgaccaccgaggtggccggggccgaaggcgaataccgc
gcggccggcaaggaccagccggagcagggcgtgtactcctcgccggccgaggcgatcatg
gcgtccgaccgcggcttgctctcggttcgggcccagatcaaggtgcggttgacgcagctg
cgtccgccggccgagatcgagaccgagctgttcggtcagaacggttggcagccaggcgat
tcgtggatggccgagacgaccctgggtcgggtgctgttcaacgagctgctgccgctgggc
tacccgttcgtgaacaagcagatgcacaagaaggtgcaggctgccatcatcaacgatctg
gccgagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctgaaggacgccggt
ttctactgggcgacccgaagcggcgtcacggtctcgatggccgacgtgctggtgccgccg
cggaagaaggagatcctcgaccactacgaggaccgggcggacaaggtcgaaaagcagttc
cagcgtggtgctttgaaccacgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtcggtaaggcgctgcgcgagcactacccggccgacaacccgatcatc
acgatcgtcgactcgggtgccacgggtaacttcacccagacccgaacgctggccggcatg
aagggcctggtgaccaacccgaagggtgagttcatcccgcgtccggtcaagtcgtcgttc
cgcgagggcctgaccgtgctggagtacttcatcaacacgcacggcgctcgaaagggtctg
gcggacaccgcgttgcgtaccgccgactccgggtacctgacccgtcgtctggtggacgtg
tcgcaggacgtcatcgtccgcgagcacgactgcgagaccgagcgcggcatcatcgtcgag
ctggccgagcgtcagcccgacggcaccctgatccgtgacccgtacatcgaaacctcggcg
tacgcacggactttgggcgccgacgcggtcgacgaggccggcaacgtcgtcgtcgcgcgt
ggtgaggacctgggcgacccgtcgatcgaggccttgctggctgcgggcatcacgcagatc
aaggtccgttcggtgctgacgtgcaccaccggtaccggtgtgtgtgcgacctgttacggg
cgttcgatggcgaccggcaagctggtcgacatcggcgaggccgtcggtatcgtggccgcg
cagtccattggtgagcccggtacgcagctgaccatgcgtaccttccaccagggtggtgtc
ggtgaggacatcaccggcggtctgccgcgtgtgcaggagctgttcgaggcccgggtgccg
cgaggcaaggcgccgatcgccgacgtcaccgggcgggttcagctcgaggacggcgagcgc
ttctacaagatcaccatcgttcccgacgatggcggcgaggaagtcgtctacgacaagctc
tccaagcggcagcggctgcgtgtgttcaagcacgaagacggttccgagcgagtgctttcc
gacggcgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcacgag
gtgctgcgcgtgcagggcccccgcgaggtgcagatccacttggtccgcgaggtccaggag
gtctaccgcgctcagggtgtgtcgatccacgacaaacacatcgaggtgatcgttcgccag
atgctgcgccgcgtcaccatcatcgactcgggcgcgacggagttcctgccgggttcgctg
atcgaccgcgcggagttcgaagcggagaaccgccgggtagtggccgagggcggcgagccc
gcggccggacgtccggtgctgatgggtatcacgaaggcgtcgctggccaccgactcgtgg
ctgagtgcggcgtcgttccaggagaccacgcgagtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaatggtctgaaggagaacgtgatcatcggaaagctgatcccggcc
ggtaccggaatcaaccggtaccgcaacatccaggttcagccgaccgaggaggcccgcgcc
gcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccaggcc
accggtgccgcggttccgctggacgactacggctacagcgactaccgctag
DBGET
integrated database retrieval system
