Miscanthus floridulus: 136450977
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Entry
136450977 CDS
T10264
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136450977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136450977
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136450977
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
136450977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
136450977
NCBI-ProteinID:
XP_066307788
LinkDB
All DBs
Position
1:203302524..203323188
Genome browser
AA seq
2418 aa
AA seq
DB search
MIPVSADVAAELRLLLECATDSNFDSIRRELCQLVDSGLDGCILVLRVCLNQVSLNAGEV
KNLQLQQKLLSDVFRYCLHKTCFATSFCEVLTTIALTDDFLESLSNLLELSVAEKVGVGL
ALSDSEDSELKQKGQLFSIAQIEELCTNPIQSVSNDQIHEIVVFLHQSDGLSKHMDTLNN
VISLLKVTERPFFAPVPNGDFDRQPNPSRHLDMYFCSTDDDFELLLSEIGKEISMADIVA
ELGYGCTVDNTHCKEILSIVEPLDDVAVSKLLGAVAGTRSGLGEAHNTYATFVSAIRNSH
TNDSPQLTKWNTDVLVDSINELAPSTNWVRVMEYLDHEGFNIPDETGFYLLMSIYTRACK
DPFPLHAVCGSLWKNTEGQISLLKHAVSAPPDKFTFAHSSRHLTFQDLAGPSQGNHAWFC
LDLLEVLCQLAEVGYTASVRSMLEYPLGHCPELLLVGLSHVSIVYNLLQYEVLPCVFPAL
LKDPTKRNVVNYLWHTNPYFTLRGFVDAHSDPDCLLRIVDVCHDLKILSSVLDSTPFAFS
IKLAAAALRKDYSHLEKWLTEKLSLYGKGFVEECVNFLKATMSNTDYVLEGTTQPQSIVK
NIYWESCYVFIKVLQSHSGQLLSDVILDEIRKLCSLYESRNPSSAVRELTSSEGGSDDIE
VEANAYFQHMFSGQISVDSMIQMLGRFKESTDKREVSIFNCMISNLFEEYKFFPKYPDKQ
LKIAAVLFGSLIKHQLVAHLALGIALRGVLDALRKSVDSKMFMFGTTALEQFMDRVIEWP
QYCNHILQISHLRGTHFEMVSAIERALAKISSSQNEPNVGNLLSAEQHVSGSSSMEGIEV
SESSWLMGTIPSQLGRPLSSSPLQHRQQGLLGERSKVSMSSLNKSIVSSQPPLASSSADL
TINPKTTAPPSLLASPHQSTSVSTSVHTGFLRPRSTSGLPRQPSYTTGFGTALNIETLVA
AAEQRDTPIETPPPEVQDKILFMINNISISNMEAKAKEFNEVIQEQYYPWFAQYMVMKRA
SIEPNFHDLYLKFFDKVNSKSLNKEILKATYENCKVLLRSDLIKSSSEERSLLKNLGSWL
GKFTIGRNQALRAKEIDPKSLIVEAYEKGLMIAVIPFTSKILEPCHSSIAYRPPNPWTMG
ILSLLAEIYNLPNLKMNLKFDIEVLFKNLTVDMKDVKPTSLLKDRLREVEGNPDFSNKDV
TASQTPVVAEVPSGTIPSLTHMEQQPEINITSRAMSLPNILNQYAAPVRLPTNSTVEDGK
VALMMPEHVPSLTQVSPAQTQSPSPSPFSVNQLMAAIPRDEIRFKINPKLGSLGPQLQYS
KIMDLALDKANREIILPVIQRSVTIASRTTKELILKDYALESDNNMITRSAHLMVATLAG
SLAHVTCKEPLRVALYSNLRNLIQNLMSGTETIEQLIHMLVNDNLDLGCAIIEAVATRQA
VELIDVEIAQSFSQRKQREAGGPAYHDSFAYAQGPFARVPEALRPKPGHLSTSQQRVYED
FVHVWNPHSQNVGATGSGLSGGATASSTLGVPRAYSPNSAPVSSSNLSTIHMSGLTSITQ
PAELGSEESVTGIAQFSSNPAQVGASESSVLLGGTIGAASTFSTLASNDLPASAMTVTTN
EISAMVPPPSTSAADRLGSILPELLNTGDALERYQQVAQKLEALIVNDGKDVEIQSVIAE
VPDILPRCVSRDEAALAVAQKVFKSLYDNTSNSTYVSWLLATLVAIRDVCKLVVKELTSW
VIYSDEEKKFNIEIIFGLIRSELLNLGEYNVHLAKLIDGGRNKVATEFAMSLVQTLITQD
SVGVSELYNVVDALSKLARRPGSPESLQQLIEIARNNVSTTTGFVVGKDEKVKLPKDKKV
LATRANKEESTANEITLVDPNQVAVLFSEWCQMCNHVSASDAAYSHFVTQLQHDGLLKGD
DISERFFRILMELAVTHSLVSEQIVAPGGSSQQSPQQHISYFSIDSYAKLVVMVLKYSSV
EITPNKASILSKILSVTVRTIQKDAEEKKASFNPRPYFRLFINWLYDLTTTDGHHDGSNF
QVLTAFANAFHMLQPLRVPAWSFAWLELVSHRSFMPKLLMCNSQKGWPFFQRLLVALFKF
MEPYLRNAELPEAVDLLYKGTMRVLLVLLHDFPEFLCDYHFSFCDVIPSSCIQMRNVILS
AFPRNMRLPDPSTPNLKIDLLAEISIAPQIMSDVDGALKSKQLKTEVDEYLKRPEGSSFL
SDLKQKLLLPQNETTVAGTRYNVPLINSLVLYVGIQAVQQLQLNKANASASVQQINHMPP
MDIFQIETATEMFRNLITSLDTEGRYLLLNAIANQLRYPNSHTHYFSFIILYLFAEATQE
IIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFTHCAPEIEKLFESVAR
SCGAKAVDEGISVQDGSH
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atgatccccgtcagcgccgatgtcgctgcggagctgcgcctcctgctcgaatgcgccacg
gactccaacttcgactccattcggcgcgagctttgccagttagttgacagtggcctggat
ggatgcattttggtgctccgagtatgtctgaatcaagtgtcgctgaatgctggggaggtc
aagaacctccagttgcaacaaaagcttttatctgatgttttcagatattgtttgcataag
acatgcttcgcaaccagtttttgtgaggtgttgacgacaatagccttgacggatgatttt
cttgaaagcttgtcaaatctgctggaactatcagttgctgagaaagttggtgttggactt
gcgctctcagattctgaggactcagagttaaagcagaaagggcaattgttttcaattgct
caaattgaagagctgtgcacgaatcctatccaatctgtatcaaatgatcaaattcatgaa
atcgtcgtgtttctgcatcagtctgatggcctgtcgaagcatatggacactttaaataat
gttatatctctactaaaagtcacagagaggccgttttttgcacctgtcccaaatggagat
tttgatagacaaccaaatccttcaagacatttggatatgtacttttgtagcacagatgat
gattttgagttgcttctgtctgaaattgggaaagaaataagcatggctgacattgtagcc
gagttgggttatggatgtactgttgacaacactcactgtaaggaaatactttccattgtt
gagcctcttgatgatgtcgctgtatctaagttgcttggggctgttgctggcactcgtagt
ggtcttggagaggcccataacacatatgcaacatttgtatctgctattcgtaatagccac
acaaatgactcacctcagcttactaaatggaacacagatgttcttgtggattcaatcaat
gaacttgccccaagtacaaactgggtgcgtgtaatggaatatcttgatcatgagggtttc
aatatacctgatgaaacaggcttttatctattgatgtctatatacacacgtgcttgcaag
gatccatttccacttcatgctgtttgtgggtcattgtggaaaaacacagaaggccagata
tcgctcttaaagcatgcggtttctgctccacctgataaatttacatttgcacattcttcc
aggcacctgacatttcaggatttggcaggtcctagccaaggcaatcatgcttggttctgc
ctcgaccttctagaagttttatgccaactagctgaagttgggtacactgcatccgtacga
tcaatgcttgagtatccactgggacattgtcctgagctcttacttgttggtcttagccac
gtcagtatcgtgtataatctcctccaatatgaagtactgccctgcgtatttcctgcttta
ctgaaggatccaacaaagcgcaatgtagtgaattatctctggcatacaaacccatacttc
acgcttcgaggttttgttgatgctcatagtgatccagattgtttgctaagaattgttgat
gtttgtcatgacttgaagattctgtcttctgtccttgattctactccatttgcattttct
attaaattggctgctgctgccttgaggaaagactatagtcatcttgagaaatggctgact
gaaaagttatctctatatggaaaaggttttgttgaggaatgtgttaatttcctgaaagca
actatgagcaacacagattatgtcttagagggcacgacacaacctcaatctattgtcaaa
aacatatattgggagtcttgttatgtcttcataaaggttctccaatctcactcggggcag
ctcttgtcagatgtaatactggatgaaataaggaaactgtgttctctgtatgaatcgagg
aatcctagctctgctgtaagagagcttactagttcagagggagggtcagatgacattgaa
gtagaggctaatgcatattttcaacacatgttctctggacagataagcgttgattccatg
atacaaatgcttgggcgcttcaaagaatctacagataagagggaggtatctattttcaac
tgtatgatctcaaatctttttgaagaatataagttctttcccaagtatcctgataagcag
cttaagatagcagctgttctgtttggatctcttattaaacatcagcttgtggctcacctt
gcgcttggaattgctctacgtggtgtcctcgatgccctgcgcaaatctgttgattcaaag
atgtttatgtttggtacaacagcactggagcagtttatggatcgtgtcatagagtggcca
caatactgtaatcacatattgcagatctcgcatcttcgtggaacacattttgaaatggtt
tctgctattgagagggccctagccaaaatctcatcaagtcaaaacgagccaaatgttggc
aacctgctttctgcagagcagcatgtttctggttcatcatccatggaaggcatagaggtg
tctgaatcatcatggctgatgggtaccatcccaagtcaactaggaaggcctctttcttct
tctcctttgcaacataggcagcagggtcttcttggggagaggtctaaggtttctatgagt
tcactgaacaagagcattgtatccagtcagcctccccttgcttcatcatctgctgatttg
actattaatccaaagacaactgctccaccctctttactagcttcacctcatcagtctacc
agtgtgtcaacgagtgtgcatactggatttctgcgtcctcgaagtacctcaggattgcct
aggcaaccttcatatactactggatttgggactgctttaaatatagagacgcttgttgct
gctgcggaacaaagagatacaccaattgagacacctccacctgaagttcaggacaaaatt
ctttttatgatcaacaatatatccatctcaaacatggaagctaaggcaaaggaatttaat
gaggtcatacaggaacagtattatccttggtttgcacaatacatggtcatgaaaagggca
agcattgaaccaaatttccatgatctgtatttgaagttctttgataaagtaaactcaaaa
tccttgaacaaggaaatactgaaagctacatatgagaactgcaaggtcttgttaagatca
gaccttatcaaatctagttctgaggagcgctccttgctaaaaaacttaggcagctggttg
ggaaagttcaccatcggtaggaaccaggcactaagggctaaggagattgacccaaaatct
cttattgtggaggcatacgagaaaggattgatgattgcggtcataccattcacttcaaag
attcttgaaccttgccactcaagtatcgcatatcgtcctccaaatccctggaccatggga
attctaagtctacttgctgaaatttataatcttccaaacctcaagatgaatctgaaattt
gatatcgaggttctatttaagaaccttactgttgacatgaaggatgtgaaaccaacctcc
ctgcttaaagatcgtctgcgagaagtcgagggaaatccagatttttcaaataaagatgtt
actgcatctcaaacccctgtggttgcagaagtcccttcaggaaccatcccatcactaact
catatggaacagcagcctgagatcaatatcacatcccgagctatgagccttccaaatata
cttaatcagtatgctgctcctgtccgtctacctacaaacagcacagtagaagatggcaaa
gttgctctgatgatgcctgagcatgtgccctcgttgacccaggtttcgccagcacaaaca
caatcaccatcaccatctccattctctgttaatcagcttatggcggctattccacgtgat
gagatacgcttcaaaataaatccaaagcttggctcccttggtccacaattgcagtatagc
aaaattatggatttggctctggataaggctaacagggagataatactccctgttattcaa
agaagtgtgacaatagcaagccgaactacaaaagaacttattctgaaggattatgcactg
gagtctgataacaatatgataactcgatctgcacatttgatggttgcaacattagctgga
agtctggcacatgttacttgcaaggaacctcttcgtgtcgcactatattccaatcttcgg
aatctcattcaaaaccttatgagcggcactgaaactatcgagcaacttattcacatgcta
gtcaacgataatttggatcttggctgtgccatcattgaggctgtggcaacacgtcaggct
gttgaattgattgatgtagaaatagcgcagtcattttcacaaaggaaacaaagagaggcc
ggtggtcctgcatatcatgattcctttgcttatgctcaagggccgtttgctcgtgtacct
gaagcactacgtcctaagcctgggcatttatctacttcccaacaaagagtgtatgaggac
tttgttcatgtgtggaatccccatagtcaaaatgtcggtgctacaggttctggtctgtct
ggtggtgctactgcctcgagcactcttggtgtacctcgagcttacagtccaaattcagca
ccggtatcctcaagtaatttgtcaactattcatatgagtggactaacatctataactcag
ccagcggaactggggtctgaggaatcagttactggtattgcacaattttcgagtaatcct
gcccaagttggagcaagcgagtcttctgtcctacttggtggaaccattggtgctgcatct
acattttctacattggcatctaacgaccttcctgccagtgcaatgactgtcacaaccaat
gaaataagtgctatggtgccacctccatcaacatctgctgccgatcgcctaggatctatt
ttacctgaacttttgaatactggggatgctttggagagataccaacaggttgcccaaaag
ctggaagcattgattgttaatgatggcaaagatgtggaaattcagtctgttattgcggaa
gttcctgatatcttacctaggtgtgttagccgggatgaggctgcattagcagtagcacaa
aaggttttcaaaagtttgtacgataacacatcaaatagtacttacgtctcctggcttcta
gcaaccttagttgcaatacgagatgtctgcaagcttgttgtcaaagagctaacaagttgg
gtaatatattcagatgaagagaagaagtttaacattgaaatcatttttggccttattcgt
tccgagttgctgaatcttggggagtacaatgttcatttggcaaagctaattgatggggga
agaaataaggtagcaacggaatttgcaatgtctcttgtccaaacattgattactcaagat
tctgttggcgtctcagagctttacaatgttgttgatgcactgtcgaagcttgcaaggaga
ccaggttcacctgaatcattgcaacaattgattgaaattgcaaggaataatgtgagcacc
actactggttttgttgttgggaaggatgaaaaggtcaaactgccaaaggataaaaaggtt
ctagctacccgggcaaacaaagaggaaagcactgctaatgaaattacactagttgatcca
aatcaggtggcagtcctgttttctgagtggtgtcagatgtgtaatcatgtgagtgctagt
gatgcggcatacagtcattttgtcacacagttgcagcatgatggtctgctgaagggagat
gatatctcagaacgcttctttcgtattctcatggaacttgctgttacacactctctagtc
tccgagcaaatcgttgctcctggtggatcatctcagcaatcaccacagcaacacatttca
tatttctccattgattcatatgcaaagcttgtagttatggttctcaagtactcttcagtg
gagataacgccaaataaagccagtatactttccaagattctatctgttacagtgagaacc
attcagaaagatgctgaggaaaagaaagcttcatttaatcctcggccatactttcgattg
tttataaattggctctatgaccttactactaccgatggccaccatgatggttctaatttt
caggttttgactgcatttgcaaatgcattccacatgctacaacccttgagagttcctgcc
tggagctttgcttggcttgagctggtgagtcacaggagcttcatgccaaaactgctgatg
tgcaattcacagaaaggttggccgttttttcagcggctgcttgttgctcttttcaaattc
atggaaccatatttgagaaatgctgaactcccagaggcggtggaccttttatacaaagga
actatgagagttctgcttgtactactgcatgactttcctgaatttctttgtgattatcac
ttcagtttctgtgatgtgattccttcaagttgcattcaaatgcgcaatgtcattcttagt
gcttttccacgtaacatgagactgccagacccttctactcctaatctaaagattgatttg
ttggctgaaatttcaatagcaccacaaatcatgtcggatgttgatggtgccctcaaatca
aagcagttgaagactgaggttgatgaatatctcaagaggccggaaggctcttcctttcta
agtgacctgaagcaaaaattgctgcttcctcagaatgaaacaactgttgccgggacacgc
tacaacgtgcctctgatcaattcacttgttctttatgttggcatccaagctgtgcaacaa
ctgcaactgaacaaagctaatgcatcggcatcagtacagcagattaaccatatgcctccg
atggacattttccagattgaaacagctaccgagatgttcagaaatcttataacaagtttg
gatacagagggccgctaccttctgttgaatgcaatcgctaaccaactgcgctatcccaat
agccatacgcactacttctccttcatcattctgtatctatttgccgaggctacccaggaa
attatccaggagcaaataacgagggttcttctggagcgtctcatagtgaaccgcccccat
ccttgggggttacttattactttcattgaattgataaagaatccgcgttacaacttttgg
aaccggtcttttacacactgtgcacctgagattgagaaactgtttgagtcggtggcaagg
tcctgcggtgcaaaagctgtagacgaaggaatcagtgtgcaggatggcagtcactaa
DBGET
integrated database retrieval system
