Miscanthus floridulus: 136521311
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Entry
136521311 CDS
T10264
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mflo Miscanthus floridulus
Pathway
mflo00040
Pentose and glucuronate interconversions
mflo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
136521311
Enzymes [BR:
mflo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
136521311
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
136521311
NCBI-ProteinID:
XP_066371123
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Position
18:19402991..19404666
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AA seq
439 aa
AA seq
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MSMAAVIRSRPLSVLFCVVVLAAVAAAAQASNNNVTSDEEYWAARAEAARSRNRAAYVSD
PVAAMNRFNVDVLRATTRRALARYNGPCMATNPIDRCWRCRADWATDRKRLAQCARGFGH
KTVGGAAGKLYVVRDPSDDEMIIPRKGTLRHAVIQDRPLWIVFARDMVIRLRQELIVSSN
KTIDGRGAQVHIVYAQITLQNVHDVILHNLHIHDAKAHSGGMIRDSKRHYGLRTRSDGDG
ISVLSSSNVWIDHVSMSSCSDGLIDVVNGSTAITVSNSHFTRHDHVMLFGASNDNPQDEV
MQITVAFNHFGRGLVQRMPRCRYGFFHVVNNDYTHWIMYAIGGNKNPTIISQGNRFIAPD
DPNAKEVTKREYTPYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDKFDFIPAKHGRY
VGQLTRFAGPLKCIVGQPC
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatggcggccgtaataaggagccgccccctgtccgttctcttctgcgtcgtcgtc
ctcgccgcggttgcagccgcggcgcaggcatccaataataacgtcacctccgacgaggag
tactgggcggcgcgcgccgaggcggcccggtcgcgcaaccgcgccgcctacgtcagcgac
cccgtggccgccatgaaccgcttcaacgtggacgtgctgagggcgacgacgcggcgcgcc
ctggcgaggtacaacggcccgtgcatggcgacgaaccccatcgaccggtgctggcgctgc
cgcgccgactgggcgacggaccgaaagcgcctggcgcagtgcgcgcgcgggttcgggcac
aagaccgtcggcggcgcggccgggaagctgtacgtggtgagggacccgagcgacgacgag
atgatcatcccgcggaagggcacgctccggcacgccgtgatccaggaccgcccgctgtgg
atcgtgttcgcgcgcgacatggtgatccggctgcggcaggagctgatcgtgagcagcaac
aagaccatcgacgggcgcggcgcgcaggtgcacatcgtgtacgcgcagatcacgctgcag
aacgtgcacgacgtgatcctccacaacctccacatccacgacgccaaggcgcactcgggc
ggcatgatccgcgactccaagcgccactacggcctgcgcacgcgcagcgacggcgacggc
atctccgtgctctcgtccagcaacgtgtggatcgaccacgtgtccatgtcgtcctgctcc
gacgggctcatcgacgtcgtgaacgggtccacggccatcaccgtgtccaacagccacttc
acgcgccacgaccacgtgatgctgttcggcgccagcaacgacaacccgcaggacgaggtg
atgcagatcacggtggcgttcaaccacttcggcagggggctggtgcagcggatgccgagg
tgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc
atcggcgggaacaagaaccccaccatcatcagccaggggaaccgcttcatcgcccccgac
gaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggag
tgggtgtggaagtcgcagggcgacgtcatgatgaacggcgccttcttcaacgagtccggc
ggccagaacgagcgcaagtacgacaagttcgacttcatcccggccaagcacggccgctac
gtcggccagctcactcgcttcgccggaccactcaagtgcatcgtcggccagccgtgctag
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