Miscanthus floridulus: 136535856
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Entry
136535856 CDS
T10264
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like isoform X1
KO
K12600
superkiller protein 3
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136535856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136535856
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
136535856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_11
TPR_16
TPR_17
TPR_8
TPR_CcmH_CycH
TPR_7
TPR_9
TPR_12
TPR_19
TPR_15
ARM_TT21_C
BTAD
Motif
Other DBs
NCBI-GeneID:
136535856
NCBI-ProteinID:
XP_066384386
LinkDB
All DBs
Position
1:complement(70809533..70816993)
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AA seq
1195 aa
AA seq
DB search
MPETAAETNLRRQLEQTLAAEPSSPLHHYNLGVFLWDRAEAEQEGDGEEARKLRTAASEH
FLAAAKLNPNDGVPFRFLGHHYARGGDNQRAAKCYQRAVTLNPDDAEAGETLCDVLDVEG
KESLELAVCKEAAGKSPRAFWAFRRLGYLQVHQRKWSEAIQSLQHAIRGYPTCADLWEAL
GLAYHRLGMFTAAVKSYGRAIELDSSRVFALIESGNIQLMLGYFRKGVEQFRSALEMAPC
NHSAYFGLASALRAWARNCVTTGAFGWAASLLKEASEASRICTSLTGNLSCVWKLHGDIQ
LALARCFPWVDGKTKRGMDAQMFKDSVQGWRNTCLSAANGAKLSYQRALHLTPWEANVHN
DMAICLDLICSMDDNNILNPNVWELPEKMSLGALMLEPVNKDFWVTLGSMSSYLALKQHS
FIRALHLDMSLSEAWACLGKIYRQSGDKQLAKQAFDRARSIDPSLALPWAGMSAENYHQS
GSSPVNESFESCLRAVQILPLPEFQIGLGTIAARSSNLLSPQVLMAVRQAVQRAPHYPES
HNLNGLISEVRLDFQSAITFYLQARFALGMMYNSKSDNRQAFADVSVNLARALCKAGLAT
DAARECEELRYQGLLSVDGLQIYALALWKIGQSKEALSVSRSLAENLSGIKAESATAAWG
FICTLTYGISGKDSAAAIIHKLPGQLNYNSQLKFIISALDALHPTKRLQLPQLNMPLKRT
AYEVMSEVHSNIALGKAIGAEFDKPLKVDGSLSYLKKVLHMYPDCSLVRNQLGSLLLWSG
DWMASHKAIRVTSLSSHGHTSSLGLRSPHHVQACAMVSCYATCPTYTKFSFATCEHQYLS
GPDAIHHLQRWVHCEPWNQDARYLLVLAIFQKAREEKYPKHICVILKKLIMQVLSNISNP
HEKEAMQYEVFLLLLLSSEVCLQSLDYENCIAQAKEALRTTPSSRVDTFFAHLQLCRAYA
VQGDLLNSRNEYLECLRNHTNTEIGWVMLKQLESACSLEGSSDEIDINLRECVKRNGSDS
SKWASLFNLACAQCFLWDVNFESAEKALAQACTQVDPDSCILFLNGATCMEIARRFVAPQ
FISRAASSLRKAQQKSHASLPLVSLLLAQAEGSLGSKTKWEKNLRLEWFSWPPELRPAEV
YFQMHLLARQSAAAASQQNQLVETTQSPELWLLRAIHLNPSCPRYWKALLQQMDV
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaccgcggcggagaccaacctccgcaggcaactggagcaaaccctcgccgcc
gaaccctccagcccactccaccactacaaccttggcgtcttcctatgggaccgcgccgag
gcagagcaggagggtgacggggaagaggcgcggaagcttcgcacggcagcgtcggagcat
tttctcgcggcggccaagctgaaccccaacgatggcgtccccttcagattccttggccac
cactacgcacgcggtggagacaatcaacgagcggccaagtgctaccagcgtgcggtgacc
ctcaaccctgatgacgctgaggctggggagacgctctgtgacgtgctagatgttgagggg
aaggagagtttggagcttgctgtgtgcaaggaggcagctggcaagtcaccgcgtgcgttc
tgggcttttcggagacttggctacttacaggttcatcagaggaaatggtcagaggctata
caaagccttcagcatgcaatacgaggttacccaacatgtgcagatttatgggaggcactt
ggtctggcataccaccgtttgggcatgttcactgcagcagtaaagtcatatggacgagct
attgaacttgatagttccagggtctttgcattgatagaaagtggaaacatccagttaatg
cttggttactttagaaagggagtagagcagtttcgttctgctttggaaatggctccatgt
aatcattcggcatactttggccttgcttctgcattgcgtgcatgggcaaggaattgtgta
actactggggcctttggttgggctgctagtctcttgaaggaagcttcagaagcttccaga
atttgtacttctttgactggaaacctttcatgcgtctggaaattgcatggagatattcag
ctcgcacttgcgagatgctttccatgggtggatgggaagaccaaaaggggcatggatgca
cagatgttcaaagattctgttcaagggtggagaaatacatgtttatcagcagcaaatggt
gcaaaactctcatatcagcgtgctttgcatcttactccctgggaagctaatgttcacaat
gatatggctatttgtcttgatctaatttgttccatggatgacaacaacatactcaacccc
aatgtttgggagctgccagagaaaatgtcactgggtgccttgatgttggaaccagttaat
aaggatttttgggttactttgggttcaatgtcaagttatctggctttgaagcagcattct
tttattagggcacttcatctcgatatgtcattgtctgaagcttgggcatgccttggaaag
atttacaggcagtctggtgataagcaattggcaaaacaagcatttgatcgagctcgaagc
attgatccttcgttggccttgccatgggctggaatgtcggcggaaaattatcaccaatct
gggagcagtcctgtaaatgaatcttttgaaagctgcttgagggctgtgcagatcctacct
ctgccagagttccagattggtcttggaacaattgctgcccgttctagcaatcttctttca
cctcaggtattgatggccgtaagacaggctgttcagcgagcacctcattacccagagtca
cacaatttaaatggcttgatttctgaagtgcgattagatttccagtctgcaatcacattt
tacttgcaagcgagatttgctttaggcatgatgtacaattccaagtcagacaatagacaa
gcttttgctgatgtttcagtgaatcttgcccgtgcactatgcaaggctggtcttgcaact
gatgcagcgcgggagtgtgaagagctgagatatcaaggactgttgagtgttgatggattg
cagatatatgctctggcattgtggaaaattggccaaagcaaggaagctctttctgtatct
agaagcttggctgaaaatttaagtggtataaaggcagagagtgcaactgcagcttgggga
ttcatatgcaccttgacatatggaatttctgggaaggactctgcagctgccatcattcac
aagcttcctggtcagctcaattacaactcacagttgaaattcattatctccgcattggat
gctttgcatccaaccaagcgtctccagctgcctcagttgaatatgcctcttaagcgtaca
gcttatgaagtgatgagtgaagtacactcgaatattgctcttgggaaggctattggtgcg
gaatttgacaagcctctgaaggttgatggtagtttgtcttacctgaaaaaagttctgcac
atgtatccggactgcagtttagtgagaaaccaacttggatccctgctgctgtggagtgga
gattggatggcttctcataaagcaataagggttacctctctgtcgtcacatggacacaca
tccagtttgggcctaagatcaccacatcatgttcaagcctgtgcaatggtttcttgctat
gctacctgccccacttacacaaagttctctttcgcaacatgtgaacaccagtacctaagt
ggacctgatgcaatacaccacctgcaaaggtgggttcattgtgaaccatggaaccaagac
gcacgctacctgcttgtgcttgccattttccaaaaagcacgggaagagaagtaccccaaa
catatctgtgttattctgaagaagctcattatgcaagtgttgtccaatattagcaatcca
catgagaaagaagctatgcagtatgaggtgttcttgctacttcttttgtcatcggaggtc
tgtttgcaatctttagactatgaaaattgcattgcccaagctaaagaagccctaagaacc
accccatcaagccgtgtggatactttttttgcacacttgcaactgtgtcgggcctatgcg
gtgcaaggggatcttttgaactccaggaacgagtacttggaatgcttgagaaaccataca
aatactgagattggctgggtaatgctgaagcaacttgaatctgcatgttcattggagggc
tcttctgatgaaatagatataaatctgcgtgaatgtgttaaaagaaatggtagcgactca
tcgaaatgggcatcccttttcaatctggcgtgtgctcagtgctttctgtgggatgtaaac
tttgaaagcgctgaaaaagctcttgctcaggcatgcactcaagtagatccggatagctgc
atcttgttccttaatggtgcaacctgtatggaaattgcccggaggtttgtagctcctcaa
tttatatctcgtgcagcttctagcctcagaaaggcccagcagaaatcacatgcttcatta
cctctcgtgtcactgctactggctcaagctgagggcagccttggctccaaaaccaagtgg
gagaaaaaccttcgcctggaatggttctcatggcccccagaactgaggcctgcagaggtg
tacttccaaatgcatctgctggcgaggcagtcggctgcagcggcttctcagcagaaccag
ctggtggagacgacgcagagccccgagttgtggttgcttcgggcgattcacctgaacccg
tcctgccccaggtactggaaggctctgctgcaacaaatggatgtgtaa
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integrated database retrieval system
