Miscanthus floridulus: 136541362
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Entry
136541362 CDS
T10264
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like isoform X1
KO
K12600
superkiller protein 3
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136541362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136541362
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
136541362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_11
TPR_16
TPR_17
TPR_8
TPR_CcmH_CycH
TPR_7
TPR_9
TPR_19
TPR_12
ARM_TT21_C
TPR_15
BTAD
Motif
Other DBs
NCBI-GeneID:
136541362
NCBI-ProteinID:
XP_066389303
LinkDB
All DBs
Position
1:complement(130576591..130587105)
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AA seq
1193 aa
AA seq
DB search
MPETAAETNLRRQLEQTLAAEPSSPLHHYNLGVFLWDRAEAEQEGDGEEARKLRTAASEH
FLAAAKLNPNDGVPFRFLGHHYARGGDNQRAAKCYQRAVTLNPDDAEAGETLCDVLDVEG
KESLELAVCKEAAGKSPRAFWAFRRLGYLQVHQRKWSEAIQSLQHAIRGYPTCADLWEAL
GLAYHRLGMFTAAVKSYGRAIELDSSRVFALIESGNIQLMLGYFRKGVEQFRSALEMAPC
NHSAYFGLASALLAWARNCVTTGAFGWAASLLKEASEASRICTSLTGNLSCVWKLHGDVQ
LALARCFPWVDGKTKRGMDAQMFKDSVQEWRNTCLSAANGAKLSYQRALHLTPWEANVHN
DMAICLDLICSMDDNNILNPNVWELPEKMSLGALMLEPVNKDFWVTLGSMSSYLALKQHS
FIRALHLDMSLSEAWACLGKIYRQSGDKQLAKQAFDRARSIDPSLALPWAGMSAENYHQS
GPVNESFESCLRAVQILPLPEFQIGLGTIAARSSNLLSPQVLMAVRQSVQRAPHYPESHN
LNGLISEVRLDFQSAITFYLQARFALGMMYNSKSDNRQAFADVSVNLARALCKAGLATDA
ARECEELRYQGLLSVDGLQIYALALWKIGQSKEALSVSRSLAENLSGIKAESATAAWGFI
CTLTYGISGKDSAAAIIHKLPGQLNYNSQLKFIISALDALHPTKRLQLPQLNMPPKRTAY
EVMSEVHSNIALGKAIGAEFDKPLKVDGSLSYLKKVLHMYPDCSLVRNQLGSLLLWSGDW
MASHKAIRVTSLSSHGHTSSLGLRSPHHVQACAMVSCYATCPTYTKFSFATCEHQYLSGP
DAIHHLQRWVHCEPWNQDARYLLVLAIFQKAREEKYPKHICVILKKLIMQVLSNISNPHE
KEAMQYEVFLLLLLSSEVCLQSLDYENCIAQAKEALRTTPSSRVDTFFAHLQLCRAYAVQ
GDLLNSRNEYLECLRNHTNTEIGWVMLKQLESACSLEGSSDEIDINLRECVKRNGSDSSK
WASLFNLACAQCFLWDVNFESAEKALAQACTQVDPDSCILFLNGATCMEIARRFVAPQFI
SRAASSLRKAQQKSHASLPLVSLLLAQAEGSLGSKTKWEKNLRLEWFSWPPELRPAEVYF
QMHLLARQSAAAVSQQNQLAETTQSPELWLLRAIHLNPSCPRYWKALLQQMDV
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaccgcggcggagaccaacctccgcaggcaactggagcaaaccctcgccgcc
gaaccctccagcccactccaccactacaaccttggcgtcttcctatgggaccgcgccgag
gcagagcaggagggtgacggggaagaggcgcggaagcttcgcacggcagcgtcggagcat
tttctcgcggcggccaagctgaaccccaacgatggcgtccccttcagattccttggccac
cactacgcacgcggtggagacaatcaacgagcggccaagtgctaccagcgtgcggtgacc
ctcaaccctgatgacgctgaggctggggagacgctctgtgacgtgctagatgttgagggg
aaggagagtttggagcttgctgtgtgcaaggaggcagctggcaagtcaccgcgtgcgttc
tgggcttttcggagacttggctacttacaggttcatcagaggaaatggtcagaggctata
caaagccttcagcatgcaatacgaggttacccaacatgtgcagatttatgggaggcactt
ggtctggcataccaccgtttgggcatgttcactgcagcagtaaagtcatatggacgagct
attgaacttgatagttccagggtctttgcattgatagaaagtggaaacatccagttaatg
cttggttactttagaaagggagtagagcagtttcgttctgctttggaaatggctccatgt
aatcattcggcatactttggccttgcttctgcattgcttgcatgggcaaggaattgtgta
actactggggcctttggttgggctgctagtctcttgaaggaagcttcagaagcttccaga
atttgtacttctttgactggaaacctttcatgcgtctggaaattgcatggagatgttcag
ctcgcacttgcgagatgctttccatgggtggatgggaagaccaaaaggggcatggatgca
cagatgttcaaagattctgttcaagagtggagaaatacatgtttgtcagcagcaaatggt
gcaaaactctcatatcagcgtgctttgcatcttactccctgggaagctaatgttcacaat
gatatggctatttgtcttgatctaatttgttccatggatgacaacaacatactcaacccc
aatgtttgggagctgccagagaaaatgtcactgggtgccttgatgttggaaccagttaat
aaggatttttgggttactttgggttcaatgtcaagttatctggctttgaagcagcattct
tttattagggcacttcatctcgatatgtcattgtctgaagcttgggcatgccttggaaag
atttacaggcagtctggtgataagcaattggcaaaacaagcatttgatcgagctcgaagc
attgatccttcgttggccttgccatgggctggaatgtcggcggaaaattatcaccaatct
ggtcctgtaaatgaatcttttgaaagctgcttgagggctgtgcagatcctacctctgcca
gagttccagattggtcttggaacaattgctgcccgttctagcaatcttctttcacctcag
gtattgatggctgtaagacagtctgttcagcgagcacctcattacccagagtctcacaat
ttaaatggcttgatttctgaagtgcgattagatttccagtctgcaatcacattttacttg
caagcgagatttgctttaggcatgatgtacaattccaagtcagacaatagacaagctttt
gctgatgtttcagtgaatcttgcccgtgcactatgcaaggctggtcttgcaactgatgca
gcgcgggagtgtgaagagctgagatatcaaggactgttgagtgttgatggattgcagata
tatgctctggcattgtggaaaattggccaaagcaaggaagctctttctgtatctagaagc
ttggctgaaaatttaagtggtataaaggcggagagtgcaactgcagcttggggattcata
tgcaccttgacatatggaatttctgggaaggactctgcagctgccatcattcacaagctt
cctggtcagctcaattacaactcacagttgaaattcattatctccgcattggatgctttg
catccaaccaagcgtctccagctgcctcagttgaatatgcctcctaagcgtacagcttat
gaagtgatgagtgaagtacactcgaatattgctcttgggaaggctattggtgcggaattt
gacaagcctctgaaggttgatggtagtttgtcttacctgaaaaaagttctgcacatgtat
ccggactgcagtttagtgagaaaccaacttggatccctgctgctgtggagtggagattgg
atggcttctcataaagcaataagggttacctctctgtcgtcacatggacacacatccagt
ttgggcctaagatcaccacatcatgttcaagcctgtgcaatggtttcttgctatgctacc
tgccccacttacacaaagttctctttcgcaacatgtgaacaccagtacctaagtggacct
gatgcaatacaccacctgcaaaggtgggttcattgtgaaccatggaaccaagacgcacgc
tacctgcttgtgcttgccattttccaaaaagcacgggaagagaagtaccccaaacatatc
tgtgttattctgaagaagctcattatgcaagtgttgtccaatattagcaatccacatgag
aaagaagctatgcagtatgaggtgttcttgctacttcttttgtcatcggaggtctgtttg
caatctttagactatgaaaattgcattgcccaagctaaagaagccctaagaaccacccca
tcaagccgtgtggatactttttttgcacacttgcaactgtgtcgggcctatgcggtgcaa
ggggatcttttgaactccaggaacgagtacttggaatgcttgagaaaccatacaaatact
gagattggctgggtaatgctgaagcaacttgaatctgcatgttcattggagggctcttct
gatgaaatagatataaatctgcgtgaatgcgttaaaagaaatggtagcgactcatcgaaa
tgggcatcccttttcaatctggcgtgtgctcagtgctttctgtgggatgtaaactttgaa
agcgctgaaaaagctcttgctcaggcatgcactcaagtagatccggatagctgcattttg
ttccttaatggtgcaacctgtatggaaattgcccggaggtttgtagctcctcaatttata
tctcgtgcagcttccagcctcagaaaggcccagcagaaatcacatgcttcattacctctc
gtgtcactgctactggctcaagctgagggcagccttggctccaaaaccaagtgggagaaa
aaccttcgcctggaatggttctcatggcccccagaactgaggcctgcagaggtgtacttc
caaatgcatctgctggcgaggcagtcggctgcagcggtttctcagcagaaccagctggcg
gagacgacgcagagccccgagttgtggttgcttcgggcgattcacctgaacccgtcctgc
cccaggtactggaaggctctgctgcaacaaatggatgtgtaa
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integrated database retrieval system
