Mariprofundus ferrinatatus: Ga0123462_2030
Help
Entry
Ga0123462_2030 CDS
T05213
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mfn
Mariprofundus ferrinatatus
Pathway
mfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ga0123462_2030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfn03019
]
Ga0123462_2030
03400 DNA repair and recombination proteins [BR:
mfn03400
]
Ga0123462_2030
Enzymes [BR:
mfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ga0123462_2030
Messenger RNA biogenesis [BR:
mfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ga0123462_2030
DNA repair and recombination proteins [BR:
mfn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ga0123462_2030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
HTH_7
Sigma70_r4_2
HTH_23
RecQ-1-like_HTH
Bombinin
Sigma70_r4
Motif
Other DBs
NCBI-ProteinID:
ATX82867
UniProt:
A0A2K8L6F7
LinkDB
All DBs
Position
2038767..2040932
Genome browser
AA seq
721 aa
AA seq
DB search
MATKKAKEQARKVLKDIFGYDEFRPMQEDIICNLLDGKDAFVLMPTGGGKSICYQIPAIM
RPGTGIVVSPLISLMKDQVDALTACGVKAAYYNSSLKAADAKDVLERFESGNLDLIYVAP
ERLLSKSFLQKIEKVDIAMFAVDEAHCVSQWGHDFRPEYVRLGELRELFPDVPMLALTAT
ADEHTREDISERLKLEKAKRFVASFDRPNIRYLVAEKRQPLTQILQFLEGWPNASGVIYC
LSRKRVEDLAVNLQRHGISAAAYHAGIPGRSREKVQDDFLRDRIKVIVATIAFGMGVDKP
NVRFVIHHDLPKSIESYYQETGRAGRDGLESEALMLYGSGDVNLVRRLIENVENIDQRRV
EVHKLNSMVAFSEALTCRRRVLLGYFGEALDEPCGNCDICLDPPATYDATEFAQAALQCV
REVKGHYGMGYIVDVLRGSTNARIRENKHDKLKSHGAGADLNADEWTSILRQLVHHGYFI
QDVSKRAAMLATKKAEHIGIGDPIILAKYQPGIKRQFKRLGTPRDEPLFKKLVKLRESIA
EKEDLPPHVVFSDVTLTELSQRKPTSDDAMRTISGVGQHKLEAYGKAFIELIKEHAEKSS
DQTESSGGKEIPKLIAKGPGLNETQSYTLSLHRKGMTIDEIAAQQGVSLETVLKHYVAII
RAGQYIDVPAFIGKTFDTIMAELDDADPYASLSEIKRDLSVDLDNDEFRLVLAWREAIGV
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaaaaagcaaaagaacaggcaagaaaagttctcaaagatattttcggttac
gatgagttccgccccatgcaggaggatatcatctgtaaccttctggatggcaaggatgca
tttgtcctgatgccgactggtggcggcaaatcgatctgctaccagattccggccataatg
cgcccgggaaccggcatagtagtatcaccgctaatctctctgatgaaggatcaggtggat
gcacttacagcctgcggcgtgaaggcggcttactacaactcatctctgaaggcagctgat
gccaaagatgtactggagcgttttgagtcaggcaacctggatctgatctatgtggcccct
gagcgcctgctctcgaaaagttttctgcagaagattgaaaaggtggatattgccatgttc
gccgtcgatgaggcccactgcgtgtcccagtggggtcatgacttccgtccggaatatgtg
cgcctgggagagttgcgtgaactcttccccgatgtgccgatgctggccctgaccgccacg
gctgatgaacatacacgtgaagatatcagcgagcgcctgaagctggaaaaggcaaagcgc
ttcgtcgccagcttcgaccgcccgaatatccgctacctggtcgccgaaaagcggcagccc
ctgacccagattctgcagtttctggaggggtggcccaatgcatcaggcgtcatctactgc
ctgtcacgcaaacgggtggaggatctggctgtaaacctgcagcgtcacggtatcagtgcc
gccgcctaccatgccggcattccgggccgctcgcgcgaaaaggtgcaggatgattttctg
cgtgaccgcatcaaggttatcgtagcaaccatcgcattcggcatgggcgtggataaaccc
aatgtccgttttgtgattcatcatgatcttcccaagagcatcgaatcctactatcaggaa
accgggcgagccgggcgtgatggcctggagtcggaggcgttgatgctctacggctccggc
gatgtgaatctggttcgccgcctgattgagaatgtcgagaatatcgaccagcgccgtgtt
gaggtgcacaagctcaacagtatggtcgcattctccgaggcactcacctgccgccgccgt
gtcctgctcggttacttcggggaagcactcgatgagccctgcggcaactgcgatatctgc
cttgatcctccggctacgtacgatgccacagagtttgcccaggctgccctgcagtgtgtg
cgcgaagtcaaggggcactacggcatgggttatattgtcgatgttctgcgcggctcaacc
aatgcccgtattcgggaaaacaagcatgataaactcaagagccatggtgctggcgccgac
cttaatgccgacgagtggacctccattcttcgccagcttgttcatcacggttactttatt
caggacgtctccaaacgtgcagccatgctggccaccaaaaaggctgaacatatcggaatt
ggtgacccgattattctcgccaagtaccagcccggcatcaaacgccagttcaagcgcctt
ggtacgccgcgtgatgagccactgttcaagaagctggtgaagctcagggagagcattgcc
gaaaaagaggatctgccgccacacgtggtgttcagtgatgttaccctgaccgaactctcg
cagcgcaaaccgaccagtgatgatgccatgcgtaccatcagtggtgttggccagcacaag
ctagaagcatacggcaaagccttcattgaactgattaaggagcatgctgaaaaatcaagc
gaccagaccgagagcagcggaggcaaggagattcccaagctgattgccaagggacccggc
ctgaatgagacccagagctataccctgtctctccaccgcaaggggatgacgatcgacgag
atcgccgcccagcagggggtaagtcttgagaccgtactcaagcactatgtcgcgatcatt
cgtgccggccagtatatcgatgtgcccgcctttatcggcaaaacattcgatacaatcatg
gctgaactggatgatgccgacccctatgcatcattgagcgaaatcaagcgtgatctctcc
gttgatctcgacaacgatgagttccggttggtcctggcatggcgtgaagcgatcggcgta
gcctga
DBGET
integrated database retrieval system
