Montipora foliosa: 137997398
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Entry
137997398 CDS
T10576
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
mfoo Montipora foliosa
Pathway
mfoo03008
Ribosome biogenesis in eukaryotes
mfoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfoo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
137997398
09123 Folding, sorting and degradation
03018 RNA degradation
137997398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfoo03019
]
137997398
03009 Ribosome biogenesis [BR:
mfoo03009
]
137997398
03016 Transfer RNA biogenesis [BR:
mfoo03016
]
137997398
03036 Chromosome and associated proteins [BR:
mfoo03036
]
137997398
Messenger RNA biogenesis [BR:
mfoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
137997398
mRNA degradation factors
5'-3' decay
5' exonucleases
137997398
Ribosome biogenesis [BR:
mfoo03009
]
Eukaryotic type
Pre-60S particles
RNases
137997398
Transfer RNA biogenesis [BR:
mfoo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
137997398
Chromosome and associated proteins [BR:
mfoo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
137997398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
DUF7555
DUF7245
Motif
Other DBs
NCBI-GeneID:
137997398
NCBI-ProteinID:
XP_068699467
LinkDB
All DBs
Position
3:37510619..37561716
Genome browser
AA seq
1675 aa
AA seq
DB search
MGVPKFYRWVSERYPCLSQVIEEHQIPDFDNLYLDMNGIIHPCSHPNDDDPHFRKSEEDI
FADIFHYIEVLFRIIKPKKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDNIRKALEKGQ
ILPTEERFDSNCITPGTPFMVRLHEQLKFFVNYKISSDLAWQGLRIYLSGHGTPGEGEHK
IMEFIRSERIRPDYDPNTRHCLYGLDADLIMLGLSTHEPHFSLLREEVRFGKAAKRITKP
EKTTFHLLHLSLFREYLDWEFSKLKDTLAFTYDLERVIDDWILMGFLVGNDFIPHLPNLH
INHDALPHLYSVYVDVMPSQDGYLHDSGQLILHRFEKYLVALSKFDREQFEEKFVDMKWF
ESKKGFTFGNNPEQAKEDESLLPLENSFSVLESMPEDTVNIESKKIMNPELEKLVQKFDD
ESSEDDEDVFETEFAMFKRDYYMQKLEYKEVNRDVLAEQTFQYVMGIQWILLYYFRGVPS
WSWFYPFHYAPFMSDIRNFGELSIQFELGTPFLPFEQLLAVLPAASRQLLPKPFQNLMIM
EQSEIIDYYPVKFKTDLNGKQHEWEAVVLIPFIDECKLLSAMSPLYARLTEEELNRNKHC
PCLLYTYDPNLSVSVPSTLPGKFPDISFCHARCEVLDKDVFHVDGQHLHRGLCKGVKLDL
FFPGFPTLYHVDHQAELKKANVKVFQMHSKGKSMILQITLPGVQDSTVEIAQKLLGETCY
VGWPHMIEALVIGVCDGIKRYTVEKKSLQNSSKEIEEQVLTEVEVKSWKHQVNTMTEHQL
ERRGIELGETNVLIEGCPIRGKRYVCGAKGLVTMEKEWSPMPISYPYQLTVKDIHVHETH
EDDKIHTIEELFPIGSQCFMLASPYYGASGKVIEIDVKQSRIRVQLHVPVEPDLSFIIDQ
HQALSLNYLPGHIVAKRLGITSNLLSRITGSFFIKQGSGNKASGDSSKLDIGLNMKFSKQ
NKEVLGFARRTEEGNWTFSPTAQKTIAEYLKKFPELFESLAKMSLNDQQSFAANDLIKEE
NGSGALSEVTDWLKTVPTQNLEPVKCGSVSLDEPVVEAIEEAVRKNKESNQKPKTVKVRV
RPYVLFAPSEYLGSIPPDSDANFQLFDRVINVKLNMAVPFGLRGTVIGFHQGEDDSDVRY
EVVFDEPFLGGQTLRCSSNKVYLMSASSLINISYGDRCEAKKIEEKSGGRGRQQQTGTSK
SQGVTPFSPSLGASPELTGKNKAGKHRAADLRQESSGAPGFGRGMFPNSPYGGGFGLSNV
GSSQQYSPSNSVNNNAKQTTPVILARGSPQTQMDGNRTVDSSSDKQMSTPPIFQKIDKGS
SEGLREFADMWKELKLKETNHPNEDNSQPAEKTLGQTTEDAINKEGTQALREMLQIGGEK
PADNQGKVEPSSRGRQLSLDELFRSQQSAQAGMQPNLPLPLPFPTGPMPSLALLNWCHSV
GLPPPYFYPTKTPQGVIVFVNLANGFKFAGSECRDEAEAVQSAASVALFQLPRIMPHMFS
PQYLPVQQQQPQRFAPGFFSTPTRPMTPSAPRNITASPSTKQQGTTQQLEPEPQGNAGNS
RNNSVTGKDKTNPPLSVTASPFVPLQVTKRSHQSSPTKLQSTVPQEVAALSQSTEQNKED
ENQQEEQNQTQENNQTSSDAPLQAIPPVQKTTAPFKRTATSSKRLLAPSFFLKKS
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccaaagttctatcgttgggtcagtgaacgatatccttgtctgagtcaagta
attgaggaacatcagattcctgattttgataatctgtatctggatatgaatggcatcatt
cacccttgttcgcatccaaatgacgatgatccacattttcgcaaaagtgaagaggatatc
tttgctgatatattccactacatagaggtgctttttcgtatcattaaaccaaagaaagtg
ttctttatggctgttgatggggtggcacctcgagcaaagatgaatcaacagcgaggcaga
cgatttcgttctgccaaagaagctgaggacaacattcgtaaagctctagaaaaaggacag
attttgccaacagaagagagatttgattcaaactgcattaccccaggtactcctttcatg
gtgcgacttcatgaacagttgaagttctttgtgaactacaagatttcctctgatcttgct
tggcaaggattaagaatctatttgtctggacatgggacacctggtgaaggagagcacaag
attatggaattcatcagatcagaaaggattcggccagactatgatcctaacacaagacac
tgtttatatgggttagatgctgacttgataatgcttggattatcaactcatgagcctcat
ttttcccttcttcgggaagaagtgagatttggaaaagcagcaaaaagaataaccaagcca
gaaaagaccacatttcatcttctccacttgtctctgttcagagaatacctggactgggaa
tttagtaaactcaaggatacattagcttttacttatgaccttgaaagggtcatagatgac
tggattctcatgggctttcttgttggaaatgattttataccacacttaccaaatctccat
attaaccatgatgcattgccccacctttacagtgtttatgtagatgttatgccttctcaa
gatggttatcttcatgacagtggccagcttatattacacagatttgagaaatacctggtt
gctttgtcaaagtttgatagagaacagtttgaagaaaagtttgtggatatgaaatggttt
gaaagtaaaaaaggttttacatttggaaacaatcctgaacaggcaaaggaagatgaatct
ttacttcctttagagaacagtttttcagtgctggaatcaatgcctgaagacactgtaaac
atagaatctaagaaaataatgaaccctgaacttgaaaaacttgtgcaaaaattcgatgat
gagtcaagtgaggatgatgaagatgtatttgagacagagtttgcaatgtttaaaagagat
tactacatgcagaaattagaatataaagaagtcaacagagatgtgctggcagagcaaaca
tttcagtatgtgatgggaattcagtggattttactgtactattttagaggggttccttct
tggagttggttttaccccttccattatgctcctttcatgtcagacatcaggaactttggt
gaattgtcaatccagtttgaactagggactcctttccttccctttgaacagcttcttgct
gtattacctgctgcaagccgtcagttgctgcccaagcctttccagaatctgatgatcatg
gaacagtctgagataatagattattatcctgttaaattcaaaactgatttaaatggtaaa
caacatgagtgggaagctgttgtcctcattccgttcatagatgagtgcaagctactcagt
gcaatgtcaccactgtatgcaaggttgacagaggaggagttgaatcgcaacaagcattgt
ccttgtctcttatacacctatgatcccaacctcagtgtttctgtaccatcgaccttgcca
gggaagtttcctgacatctcattttgccatgccaggtgtgaagtgcttgacaaagatgtt
ttccatgtagacggacaacatctgcatcgtggcctttgcaaaggtgtgaagcttgacctg
ttttttcctggatttccaactttgtatcatgttgatcatcaggctgagctgaagaaggca
aatgttaaggtttttcaaatgcacagcaaagggaagagtatgattcttcagatcactcta
ccaggtgtacaggactcaacagttgaaatagcacagaaattgcttggtgagacttgttac
gttggctggcctcatatgattgaagctttggtcattggagtatgtgatggcattaaaaga
tatactgttgaaaaaaagagcttacaaaattcctcaaaagaaatagaagagcaggtattg
acagaggttgaggtcaaaagctggaaacatcaggtcaatactatgacagagcatcagttg
gaaagaagaggaattgagcttggagaaacaaatgtgttgattgaaggctgtccaattaga
gggaagagatatgtgtgtggagcaaaaggtcttgttaccatggaaaaggaatggtcacct
atgcccatttcatatccttaccaacttaccgtcaaggacatacatgtacacgagacccat
gaggatgataaaattcacaccattgaggaactttttcccattggtagtcagtgcttcatg
ttagcatctccgtattatggtgcatctggcaaagttattgaaattgatgtgaagcaatct
cgcatcagagtgcagctacatgttcctgttgagcctgacttgtcatttatcattgatcaa
catcaggctttgtcacttaattaccttcctggtcacattgtagccaagaggcttggcata
acttccaatttgctatcaagaataacaggcagcttctttatcaaacagggatccgggaac
aaggcatctggtgatagcagcaagcttgacattggattgaacatgaagtttagcaaacag
aataaagaggttcttggatttgctcgaagaacagaagaaggcaactggacattttctccc
acagcacagaagacgatagctgaatatttaaaaaagttccctgagctatttgagtcccta
gcaaagatgtcattaaatgatcaacagagtttcgcagcgaatgatttgattaaagaagaa
aatgggtctggagcattatcggaagttacagactggctgaagacagtaccaactcaaaac
ttagagccagttaaatgtggcagtgtcagcttagatgaacccgttgttgaagctatagag
gaggccgtcagaaaaaataaggaatccaaccagaaacccaagacagtcaaagttcgtgtg
agaccttacgtactgttcgcgccatctgaatatctggggtccattcctcctgacagtgac
gcaaactttcagttgtttgatcgagttatcaacgtcaaactgaacatggctgttcctttt
ggattaaggggaactgttattggtttccatcaaggagaggacgattctgatgtgaggtat
gaagttgtgtttgatgagccattccttggtggacagactctaagatgttcatcaaacaaa
gtttacttaatgtcagcctcgtcactgattaacattagttatggtgatcgctgtgaagct
aagaaaattgaggagaaatcaggtggaagaggccgacaacagcagacaggcacttccaag
tcacaaggcgttactccatttagccccagcttgggtgcctcacccgaactaacaggaaag
aataaagctggcaaacatagagcagcagacttaagacaggaatcttcgggagcgccaggg
ttcggtcgtggaatgtttccaaattctccgtatggtggaggctttggattgtcaaatgtt
ggttcttcccagcaatattcaccatcaaactcagtcaacaataatgcaaaacagacaaca
ccagtgattctagccagaggatcaccacaaactcagatggatggcaacagaacggttgac
agcagtagtgataaacagatgtccacacccccaatattccaaaagattgacaaaggatcc
agtgagggtctgagagaatttgcggacatgtggaaagaactaaagcttaaagaaaccaat
cacccaaatgaagacaactctcaaccagctgaaaagactcttggacaaacaacggaggat
gcaattaataaagaagggactcaggcccttcgtgaaatgcttcagattggcggcgaaaag
cccgcagataatcaaggtaaagtcgagccatcttcccgcggcagacagctgtccctggat
gaactctttcgaagtcaacaatctgcacaagccggcatgcagccgaatcttcctttgccc
ttaccgtttcctaccgggcccatgccatcattagctctgttaaactggtgtcattctgtt
ggtcttccgccgccgtatttttatcctactaaaacccctcagggcgttatcgtttttgtg
aatttggccaatggtttcaagtttgctggcagtgaatgtcgcgacgaggccgaagctgtc
caaagtgcagcatctgttgctctgtttcagctgccgcgcattatgccgcatatgttcagc
cctcaatacctccccgtacagcaacagcagcctcagcgctttgcaccaggcttcttttcc
actcctactcgtccaatgaccccatcagcgcctaggaacattactgcaagcccatctaca
aagcagcaaggcaccacgcagcaactggaacccgagcctcaaggcaacgcaggaaattca
cgaaataacagtgtaacagggaaagacaaaacaaatccacctcttagtgttacggcaagc
ccattcgttccattacaggttaccaaacgaagtcaccagtcgtcaccaacaaaacttcag
tcgactgtgccacaggaagttgcggccctcagtcaatccacagaacaaaacaaagaagac
gaaaatcagcaagaagaacaaaaccagacacaagaaaataaccaaacaagcagcgatgct
ccattgcaagcaattccaccagtgcaaaaaactactgctccttttaagagaactgccact
tcctcaaaaagactccttgctccaagtttctttttgaagaaaagttag
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