Alexandromys fortis (reed vole): 126502756
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Entry
126502756 CDS
T08493
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mfot
Alexandromys fortis (reed vole)
Pathway
mfot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126502756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfot03019
]
126502756
Messenger RNA biogenesis [BR:
mfot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126502756
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126502756
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
126502756
NCBI-ProteinID:
XP_049999942
LinkDB
All DBs
Position
Unknown
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMSKGRPPSASSLDAISPVQIDPLGGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgtctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgattcaggagtgtgcctcg
ctgattacaaagccaaattttatctcgacattgtcatatgccattgataatccattgcac
taccagaagagtctaaagcctgcaccccatttatttgcccagctgagtaaagttctcaag
ttaagtaaagtacaagaggtaatttttggtcttgcccttttgaattcttctagttcagat
ctcaggggttttgctgcccaatttataaaacagaagcttccagatcttctgcgttcttac
atagacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacatctcctactctcccatctcctctttgggcagaagggagcctttggagttggacag
gagcaaatagacgcttttcttaagacactgcgcagagattttccccaagaacgttgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcttg
cctgactctggaggggtagctaaaaccatgatggagagctctctggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcgaact
cattcaggattaacagacggtattccattacagagcatctctgctcctggcagtgggatc
tggagtgacggaaaagataaaagtgaaggcgcacaggcacacacatggaatgtagaggtt
ttgattgatgttcttaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagcaaagggcttcataacgtggtttatggt
attcagaggggcctgggcatggaagtgtttccagtggatttcatatataggccttggaaa
catgcagaaggccagctctccttcatccagcattccctgataaacccagaggtcttctgc
tttgccgactacccctgtcatactgttgctactgacattttgaaagcgccaccagaggat
gacaatcgagaaattgccacatggaaaagcttggatttgattgagtctctgctgaggctt
gcagaggttggacagtatgagcaagtgaaacaactctttagcttccctatcaaacactgt
ccagacatgctggtattggccttactacaaatcaacacctcctggcacacgttacgccat
gaactcatctctactttgatgccaattttccttggaaaccatcctaactctgccattatt
ttgcactatgcatggcatgggcagggacagtctccatcaattcgccaacttataatgcat
gcaatggcagaatggtacatgagaggggaacaatatgatcaggccaaattgtctcgaata
cttgacgtggcccaggacttgaaggccttgtcaatgctgctaaatggcactccatttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgacaagtgg
ctaacagataaaataagagaacatggggagccttttattcaggcatgcatgactttttta
aagagaaggtgcccttctattttgggtggacttgccccagagaaagatcaaccgaaaagt
gctcaacttcctgctgaaactctagcaacaatgttggcttgtctacaggcttgtgcaggg
agtgtttctcaggagttatcagagaccatcctcaccatggtagccaattgcagtaatgta
atgaataaggccagacaaccaccacctggagttatgtcaaaaggtcgccctcctagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttggtggaatggcatctctt
agtataggtggttcagctgcccctcacacacagagtatgcaaggttttcctccaaatttg
ggttctgcgttcagtactcctcagtcaccagcaaaagcatttccacctctttcaacccca
aatcaaacaactgcattcagtggtattggaggactttcatcccaacttccagtaggtggt
cttggcacaggaagcctgactggtataggaactggggcccttggacttcctgcagtgaac
aacgacccttttgtacagaggaaactgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttccgacttgtctcaggtgtggccagaggccaatcagcacttc
agtaaagagatagatgatgaagcaaacagctatttccagcgaatatataaccatccacca
catccaaccatgtccgttgatgaggtactagaaatgctacagagatttaaagactctact
ataaaaagggagcgagaagtatttaactgtatgctaaggaacttgtttgaagaatatcgg
tttttcccccagtaccctgataaagaattacatataacagcctgcctgtttggtggcata
attgaaaaaggactggtcacttatatggcattgggtctggccctgcgatatgttcttgaa
gccttacggaagccttttggatcaaaaatgtattattttggtattgctgcactagataga
tttaaaaatagattgaaggactatcctcagtattgtcagcacttggcttctattagtcac
tttatgcagtttccacatcatttgcaggagtatattgagtacggacagcagtctcgagat
cctcctgtgaagatgcagggctctatcacaacccctggaagtattgcactggctcaggcc
caggctcaggcccaggttccagcaaaagctcctcttgcgggtcaggtcaacacaatggta
accacctcaacaacaaccactgttgctaaaacggttacagtcaccaagccaacgggagtc
agctttaagaaagatgtgccaccttctataaatacaacaaatatagatacattgcttgtg
gctacagatcaaaccgagaggattgtagagcccccagaaaatatccaagagaaaattgct
tttatcttcaacaacctctcacagtcaaatatgacccagaaggttgaagagcttaaagaa
actgtgaaggaagagtttatgccttgggtttcccagtatctagttatgaaaagagtcagt
attgagccaaactttcatagcctgtattccaactttcttgacacattgaagaatccagaa
tttaacaagatggttctgaatgaaacctacagaaacattaaagtgctgctgacctctgat
aaagctgcggccaatttctcggatcgttctttgctgaagaacttggggcattggctagga
atgatcacattagctaaaaataaacccattttgcacacggacttggatgtgaaatctttg
ctgctagaggcttatgttaaaggacaacaagagttgctttatgtagtgccctttgttgcc
aaagttctagagtccagcattcgtagtctggtttttagaccaccaaacccctggacaatg
gcaattatgaatgtattggctgagctacaccaagagcatgacttaaagttaaacttgaag
tttgagattgaggtgctctgtaagaaccttgcattagacatcaatgaactcaaacctgga
aacctcctgaaagataaagaccgcctgaagaacttagatgaacaactctccgctccaaag
aaagacgtcaaacagccggaagagcttcctgccatcacgacgacaacaacttctacaacg
ccagctaccagtactacctgtacagccacagttccaccacagccacagtatagctaccac
gacatcaatgtttattctctggcaggcctggccccacacattactctaaaccctacaata
cctttgtttcaggctcatccacagttgaagcagtgtgtgcggcaagcaattgaacgggct
gtccaggagctagttcatcctgtggtagatcggtcaattaagattgccatgactacttgt
gaacagatagtcagaaaggatttcgccctggattctgaggaatccagaatgcgaatagca
gctcatcacatgatgcggaacttgacagctggaatggctatgattacttgcagggagcct
ttactgatgagcatatctaccaacctaaaaaacagttttgcctcagctcttcgtactgca
tccccacaacaaagggaaatgatggaccaggctgctgctcagttagctcaggacaattgt
gaattagcttgctgttttattcagaaaactgcagtggagaaagcaggccctgagatggac
aagagattggcaactgaatttgagctgagaaaacatgctcggcaagaaggacgcagatac
tgtgatcctgttgtattaacatatcaagcggaacggatgccagagcaaatcaggctgaaa
gttggcggtgtggacccaaagcagctagccgtttatgaagagtttgcacgaaatgtgcct
ggcttcttacctacaaatgacttaagtcaacctacaggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgtattacagaactggag
cagcacctacatgccattccaccaactctggccatgaatcctcaagcccaagctctacga
agtcttttggaggttgtagtgttgtctcggaattctcgagatgcgatagctgctcttgga
ttacttcagaaggctgtagagggtttattagatgccacaagtggtgctgatgctgacctg
ctgctgcggtacagggaatgtcacctcttggtactaaaagctttgcaggatggcagggca
tatggatctccatggtgcaacaaacagatcacaaggtgcctaattgaatgtcgagatgaa
tataaatataatgtggaggctgtggagttgttaattcgaaatcatttggttaacatgcag
cagtatgatcttcatctagctcagtcaatggagaatggcttaaactacatggccgtggca
tttgctatgcaactggtaaaaattctgctggtggatgaaaggagtgttgcccatattact
gaggcagatctattccataccattgaaaccctcatgaggattaatgctcattccagaggc
aatgctccagaaggattgcctcagctgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcacggaggccctaactttatgatgcattctgggatctctcaagcctca
gaatatgatgaccctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctataccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccaacaaggaatacttaagactgatgac
ctcataacaaggttttttcgtctttgcactgaaatgtgtgtcgaaatcagttaccgtgct
caagcagagcagcagcacaatcctgctgctaatcccaccatgatccgagccaagtgctat
cacaacctggatgcctttgtccgcctcattgcactgttagtgaagcactctggggaggcc
accaacactgtcacaaagatcaatctcctgaataaggttctcgggattgtagtgggagtt
ctcctacaggatcatgatgttcggcagagtgaatttcagcagcttccctaccataggatt
tttatcatgttgctattggagctcaatgcacctgaacatgtgttggaaaccattaatttc
cagactcttacagctttctgcaatacattccacatcttaaggcctaccaaagctcctggc
tttgtatatgcctggcttgaattgatctcccatcggatctttattgcaagaatgctggca
catacgccacagcagaaggggtggcctatgtatgcacagctgttgattgatttattcaaa
tatttagcgcctttccttagaaatgtggaactcactaaacctatgcaaatcctctataag
ggtactctaagagtgctgctagttcttttgcatgatttcccagagttcctttgtgattac
cattatgggttctgtgatgtgatccctcctaattgtatccagttaagaaatttgatcctg
agtgccttcccaagaaacatgaggctcccagacccattcactcctaacctgaaggtggac
atgctgagtgaaattaacattgcgcctcggatcctcaccaatttcactggagtgatgcca
cctcagttcaaaaaagatttggattcctatcttaaaactcgatcccctgtcacttttcta
tcggatctgcgcagtaacctacaggtatctaacgagcctggcaatcgctacaacctccag
cttatcaatgcactggtgctctatgtagggactcaggccatcgcacacatccacaacaag
ggcagcacgccttcaatgagcaccattacccactcagcacacatggacatcttccagaat
ctggctgtggacttagacaccgagggccgatatctcttcttaaatgcaattgcaaaccag
ctgcggtacccaaacagccacactcactacttcagctgcaccatgctgtacctttttgcc
gaggcgaataccgaggcaattcaggaacagatcacaagggttcttttggaacggttgatt
gtaaataggccgcatccttggggtcttcttatcaccttcattgagctgattaaaaaccca
gcatttaagttctggaaccacgagtttgtacactgtgccccagagattgaaaagttattc
caatctgttgcacagtgctgcatgggacagaaacaggctcagcaagtgatggaagggact
ggtgccagttag
DBGET
integrated database retrieval system
