Megamonas funiformis: GXM21_01640
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Entry
GXM21_01640 CDS
T06475
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mfun
Megamonas funiformis
Pathway
mfun02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mfun00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GXM21_01640 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfun03021
]
GXM21_01640 (rpoD)
Transcription machinery [BR:
mfun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GXM21_01640 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
EF-hand_7
Astro_VPg
Motif
Other DBs
NCBI-ProteinID:
QIB59149
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Position
complement(345639..346775)
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AA seq
378 aa
AA seq
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MAQSKKNVKAVKDTNAAAAASLDAISKLLDKGKKTGVLTYNEIMESLQSVDMSPDEIDEL
YDTFTKRGIDIIDNGNDIGPDDDSNLKDDEDDIDIDLSIPEGINIDDPVRMYLKEIGRVP
LLSADEEIKLAKRMEDGDLEAQKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK
AVEKFDYNKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQSL
GREPSPEEIAKEMDVSVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDHDAPAPAEA
ASFVLLKEQLEDVLDTLTEREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKA
LRKLRHPSRSKKLKDFLE
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatccaaaaaaaatgtaaaagccgttaaagatactaatgcagcagctgctgcc
agcttagacgcaatcagtaagttattagataaaggtaaaaaaactggcgttttaacttac
aatgaaattatggaatcccttcaatcagttgacatgtcaccagatgaaatagacgaatta
tacgatacattcaccaaacgtggcattgacatcattgataatggtaatgatataggacca
gatgatgattctaatctcaaagatgatgaagatgatattgatattgaccttagcattcct
gaaggtataaatatcgatgaccctgttagaatgtatcttaaagaaattggtcgtgttcca
ttattatctgctgatgaagaaataaaattagcaaaacgcatggaagatggggatcttgaa
gctcaaaaacgcctagcagaagcaaacttacgtcttgttgtaagtattgctaaacgttat
gttggtcgtggcatgctctttttggacttaatccaagaaggtaacttaggcttaataaaa
gctgttgaaaaattcgattacaataaaggctacaaatttagtacttatgctacatggtgg
attcgtcaagccattactcgtgctattgccgaccaagctcgtactattcgtattcctgtc
cacatggttgaaaccatcaataaattaattcgcgtatctcgtcaacttctccaatcctta
ggacgtgaaccaagccctgaagaaatagcaaaagaaatggacgtaagtgtagatcgcgta
cgtgaaatcatgaaaatagctcaagaaccagtatctttggaaacacctatcggtgaagaa
gaagattctcatcttggagatttcattgaagaccatgatgcaccagctcctgctgaagca
gcatcttttgtacttttaaaagaacaattagaagatgttcttgatactttaactgaacgt
gaagaaaaagttcttcgtcttcgctttggtttagatgatggtcgtgctcgtactttggaa
gaagtaggtcaaaattttggtgtaacacgtgaacgtattcgccaaattgaagcaaaagca
cttcgcaaacttcgtcatcctagccgtagtaaaaaattaaaagatttcttagaataa
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